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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2071 46.59 0 2513731..2514756 + 341 157375212 - Ssed_2075 - cation diffusion facilitator family transporter 2072 45.48 0 2514787..2515206 + 139 157375213 - Ssed_2076 - MarR family transcriptional regulator 2073 43.02 0 2515587..2516618 + 343 157375214 - Ssed_2077 - diguanylate cyclase 2074 51.10 +1 2516697..2519387 - 896 157375215 - Ssed_2078 - GCN5-related N-acetyltransferase 2075 50.96 +1 2519819..2520760 - 313 157375216 - Ssed_2079 - lipid kinase 2076 52.69 +1 2521360..2522475 + 371 157375217 - Ssed_2080 - cobalamin biosynthesis protein 2077 54.64 +2 2522475..2523131 + 218 157375218 - Ssed_2081 - precorrin-8X methylmutase 2078 50.12 0 2523128..2524384 + 418 157375219 - Ssed_2082 - precorrin-6Y C(5,15)-methyltransferase (decarboxylating) 2079 53.49 +1 2524381..2525139 + 252 157375220 - Ssed_2083 - precorrin-2 methyltransferase 2080 52.91 +1 2525139..2526665 + 508 157375221 - Ssed_2084 - cobalamin biosynthesis protein CbiG-like protein 2081 48.53 0 2526776..2527591 + 271 157375222 - Ssed_2085 - cobalamin biosynthesis protein CbiK Co2+ chelatase-like protein 2082 49.31 0 2527588..2528451 + 287 157375223 - Ssed_2086 - precorrin-3B C(17)-methyltransferase 2083 48.32 0 2528448..2529221 + 257 157375224 - Ssed_2087 - precorrin-3 methylase 2084 54.46 +2 2529218..2530585 + 455 157375225 - Ssed_2088 - uroporphyrinogen-III methylase-like protein 2085 51.32 +1 2530575..2531480 + 301 157375226 - Ssed_2089 - cobD; cobalamin biosynthetic protein 2086 51.47 +1 2531477..2532595 + 372 157375227 - Ssed_2090 - cobalamin biosynthetic protein CobC 2087 42.14 -1 2532946..2533683 + 245 157375228 - Ssed_2091 - hypothetical protein 2088 48.77 0 2534170..2534940 + 256 157375229 - Ssed_2092 - ABC cobalt transporter, periplasmic binding protein CbiN 2089 46.53 0 2534950..2535555 + 201 157375230 - Ssed_2093 - cobalamin (vitamin B12) biosynthesis CbiM protein 2090 49.20 0 2535548..2536108 + 186 157375231 - Ssed_2094 - hypothetical protein 2091 47.79 0 2536105..2536872 + 255 157375232 - Ssed_2095 - ABC-type cobalt transport system permease component CbiQ and related transporter-like protein 2092 46.40 0 2536919..2537584 + 221 157375233 - Ssed_2096 - ABC transporter related 2093 34.89 -2 2537859..2538755 + 298 157375234 - Ssed_2097 - hypothetical protein 2094 46.91 0 2538866..2539675 - 269 157375235 - Ssed_2098 - hypothetical protein 2095 45.39 0 2540616..2540897 - 93 157375236 - Ssed_2099 - reductive dehalogenase anchoring protein, putative 2096 46.74 0 2540904..2542328 - 474 157375237 - Ssed_2100 - tetrachloroethene dehalogenase 2097 40.90 -1 2542457..2543368 - 303 157375238 - Ssed_2101 - hypothetical protein 2098 40.54 -1 2543947..2545056 + 369 157375239 - Ssed_2102 - hypothetical protein 2099 47.83 0 2545094..2546617 + 507 157375240 - Ssed_2103 - hypothetical protein 2100 44.98 0 2546617..2546925 + 102 157375241 - Ssed_2104 - hypothetical protein 2101 42.71 -1 2547010..2548236 + 408 157375242 - Ssed_2105 - hypothetical protein 2102 38.47 -2 2548518..2549393 + 291 157375243 - Ssed_2106 - hypothetical protein 2103 40.55 -1 2549490..2550251 - 253 157375244 - Ssed_2107 - amino acid ABC transporter periplasmic protein 2104 47.19 0 2550465..2551034 + 189 157375245 - Ssed_2108 - fructose-2 6-bisphosphatase-like protein 2105 39.07 -2 2551794..2552438 + 214 157375246 - Ssed_2109 - hypothetical protein 2106 45.25 0 2553316..2553978 + 220 157375247 - Ssed_2110 - GntR family transcriptional regulator 2107 51.54 +1 2554047..2554925 + 292 157375248 - Ssed_2111 - 2-methylisocitrate lyase 2108 49.33 0 2555063..2556187 + 374 157375249 - Ssed_2112 - 2-methylcitrate synthase 2109 51.13 +1 2556254..2558860 + 868 157375250 - Ssed_2113 - aconitate hydratase 2110 50.74 +1 2558973..2560190 + 405 157375251 - Ssed_2114 - putative AcnD-accessory protein PrpF 2111 46.97 0 2560368..2562017 - 549 157375252 - Ssed_2115 - ABC transporter ATPase 2112 45.31 0 2562300..2562800 + 166 157375253 - Ssed_2116 - hypothetical protein 2113 44.52 0 2564557..2565933 - 458 157375254 - Ssed_2117 - MATE efflux family protein 2114 42.02 -1 2565948..2566580 + 210 157375255 - Ssed_2118 - riboflavin synthase subunit alpha 2115 41.29 -1 2566622..2566822 - 66 157375256 - Ssed_2119 - hypothetical protein 2116 44.38 0 2567679..2569607 + 642 157375257 - Ssed_2120 - threonyl-tRNA synthetase 2117 41.67 -1 2569818..2570153 + 111 157375258 - Ssed_2121 - translation initiation factor IF-3 2118 42.05 -1 2570237..2570431 + 64 157375259 - Ssed_2122 - 50S ribosomal protein L35 2119 41.39 -1 2570450..2570809 + 119 157375260 - Ssed_2123 - 50S ribosomal protein L20 2120 46.27 0 2571083..2572033 - 316 157375261 - Ssed_2124 - thioredoxin reductase 2121 46.15 0 2572169..2573284 - 371 157375262 - Ssed_2125 - alanine dehydrogenase 2122 38.10 -2 2573465..2573968 + 167 157375263 - Ssed_2126 - leucine-responsive transcriptional regulator 2123 46.86 0 2574152..2576665 + 837 157375264 - Ssed_2127 - cell division protein FtsK/SpoIIIE 2124 44.50 0 2576780..2577406 + 208 157375265 - Ssed_2128 - outer membrane lipoprotein carrier protein LolA 2125 49.10 0 2577416..2578747 + 443 157375266 - Ssed_2129 - recombination factor protein RarA 2126 41.33 -1 2578740..2579114 + 124 157375267 - Ssed_2130 - CrcB protein 2127 45.77 0 2579133..2580419 + 428 157375268 - Ssed_2131 - seryl-tRNA synthetase 2128 45.54 0 2580854..2581189 - 111 157375269 - Ssed_2132 - DsrC family protein 2129 44.91 0 2581300..2581515 - 71 157375270 - Ssed_2133 - DsrH family protein 2130 46.46 0 2581581..2581961 - 126 157375271 - Ssed_2134 - DsrE family protein 2131 46.92 0 2582008..2582397 - 129 157375272 - Ssed_2135 - DsrE family protein 2132 44.09 0 2582563..2583222 - 219 157375273 - Ssed_2136 - hypothetical protein 2133 46.95 0 2583472..2584374 - 300 157375274 - Ssed_2137 - putative DNA-binding transcriptional regulator 2134 43.48 0 2584412..2585752 + 446 157375275 - Ssed_2138 - inner membrane transport protein YdhC 2135 48.81 0 2586794..2588008 - 404 157375276 - Ssed_2139 - hypothetical protein 2136 47.31 0 2588337..2590211 - 624 157375277 - Ssed_2140 - hypothetical protein 2137 41.49 -1 2590323..2591156 + 277 157375278 - Ssed_2141 - hypothetical protein 2138 45.67 0 2591241..2592002 - 253 157375279 - Ssed_2142 - hypothetical protein 2139 49.34 0 2592192..2594090 - 632 157375280 - Ssed_2143 - hypothetical protein 2140 45.67 0 2594437..2595198 - 253 157375281 - Ssed_2144 - hypothetical protein 2141 47.80 0 2595356..2597311 - 651 157375282 - Ssed_2145 - hypothetical protein 2142 52.01 +1 2597657..2598550 - 297 157375283 - Ssed_2146 - ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein 2143 48.81 0 2598738..2599622 + 294 157375284 - Ssed_2147 - ABC transporter, ATP-binding protein 2144 50.71 +1 2599619..2600602 + 327 157375285 - Ssed_2148 - putative ABC transporter, permease protein 2145 47.76 0 2600895..2601809 + 304 157375286 - Ssed_2149 - cytochrome c family protein 2146 48.36 0 2601821..2603830 + 669 157375287 - Ssed_2150 - outer membrane protein 2147 41.60 -1 2604163..2604561 + 132 157375288 - Ssed_2151 - transporter 2148 44.26 0 2605004..2605909 + 301 157375289 - Ssed_2152 - hypothetical protein 2149 46.31 0 2606044..2607060 - 338 157375290 - Ssed_2153 - hypothetical protein 2150 53.68 +1 2607087..2607671 - 194 157375291 - Ssed_2154 - Cob(I)yrinic acid a,c-diamide adenosyltransferase 2151 54.05 +1 2607668..2608444 - 258 157375292 - Ssed_2155 - cobalamin 5'-phosphate synthase 2152 52.82 +1 2608441..2609805 - 454 157375293 - Ssed_2156 - hypothetical protein 2153 52.61 +1 2609805..2611262 - 485 157375294 - Ssed_2157 - cobyric acid synthase 2154 50.42 +1 2611259..2612335 - 358 157375295 - Ssed_2158 - hypothetical protein 2155 53.12 +1 2612336..2612977 - 213 157375296 - Ssed_2159 - hypothetical protein 2156 51.50 +1 2612974..2613540 - 188 157375297 - Ssed_2160 - cobinamide kinase; cobinamide phosphate guanylyltransferase CobU 2157 50.22 0 2613537..2614436 - 299 157375298 - Ssed_2161 - periplasmic binding protein 2158 51.52 +1 2614437..2614964 - 175 157375299 - Ssed_2162 - cobalbumin biosynthesis enzyme 2159 54.50 +2 2614965..2615975 - 336 157375300 - Ssed_2163 - transport system permease protein 2160 48.46 0 2615962..2616774 - 270 157375301 - Ssed_2164 - ABC transporter related 2161 49.43 0 2616832..2618682 - 616 157375302 - Ssed_2165 - TonB-dependent vitamin B12 receptor 2162 48.88 0 2619453..2622635 - 1060 157375303 - Ssed_2166 - acriflavin resistance protein 2163 47.61 0 2622639..2623829 - 396 157375304 - Ssed_2167 - RND family efflux transporter MFP subunit 2164 49.25 0 2624216..2625214 - 332 157375305 - Ssed_2168 - hypothetical protein 2165 44.00 0 2625656..2626030 + 124 157375306 - Ssed_2169 - hypothetical protein 2166 43.22 0 2626294..2626647 + 117 157375307 - Ssed_2170 - nitrogen regulatory protein PII 2167 52.87 +1 2626778..2628031 - 417 157375308 - Ssed_2171 - DNA-directed DNA polymerase 2168 48.83 0 2628167..2628592 - 141 157375309 - Ssed_2172 - SOS-response transcriptional repressor LexA -like protein 2169 46.80 0 2628767..2629687 + 306 157375310 - Ssed_2173 - putative manganese-dependent inorganic pyrophosphatase 2170 50.54 +1 2629931..2631697 + 588 157375311 - Ssed_2174 - acetyl-CoA synthetase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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