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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2037 47.67 0 2470393..2471445 - 350 157375178 - Ssed_2041 - electron transport complex, RnfABCDGE type, D subunit 2038 49.47 0 2471449..2473977 - 842 157375179 - Ssed_2042 - electron transport complex protein RnfC 2039 49.47 0 2473971..2474540 - 189 157375180 - Ssed_2043 - electron transport complex, RnfABCDGE type, B subunit 2040 46.29 0 2474543..2475121 - 192 157375181 - Ssed_2044 - Na(+)-translocating NADH-quinone reductase subunit E 2041 41.86 -1 2475230..2477128 - 632 157375182 - Ssed_2045 - diguanylate cyclase/phosphodiesterase 2042 45.51 0 2479256..2481283 + 675 157375183 - Ssed_2046 - excinuclease ABC subunit B 2043 47.67 0 2481323..2481838 - 171 157375184 - Ssed_2047 - rhomboid family protein 2044 44.92 0 2481935..2482633 - 232 157375185 - Ssed_2048 - ExsB protein 2045 45.74 0 2482821..2483489 + 222 157375186 - Ssed_2049 - radical activating enzyme 2046 47.27 0 2483486..2484547 - 353 157375187 - Ssed_2050 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2047 45.24 0 2485769..2486272 + 167 157375188 - Ssed_2051 - hypothetical protein 2048 40.62 -1 2486551..2486838 + 95 157375189 - Ssed_2052 - hypothetical protein 2049 44.12 0 2487012..2489180 + 722 157375190 - Ssed_2053 - putative diguanylate phosphodiesterase 2050 44.86 0 2489235..2489720 - 161 157375191 - Ssed_2054 - SecC motif-containing protein 2051 41.58 -1 2489710..2490279 - 189 157375192 - Ssed_2055 - hypothetical protein 2052 44.84 0 2490380..2490970 + 196 157375193 - Ssed_2056 - Smr protein/MutS2 2053 47.49 0 2491071..2492906 - 611 157375194 - Ssed_2057 - peptidyl-dipeptidase A 2054 44.01 0 2493092..2494318 - 408 157375195 - Ssed_2058 - NAD/FAD-binding protein-like protein 2055 44.90 0 2494356..2495885 - 509 157375196 - Ssed_2059 - hypothetical protein 2056 41.50 -1 2496175..2496774 + 199 157375197 - Ssed_2060 - hypothetical protein 2057 39.11 -2 2497101..2497325 + 74 157375198 - Ssed_2061 - hypothetical protein 2058 45.32 0 2497435..2498352 + 305 157375199 - Ssed_2062 - hypothetical protein 2059 45.30 0 2498422..2498889 + 155 157375200 - Ssed_2063 - hypothetical protein 2060 41.31 -1 2498889..2499740 + 283 157375201 - Ssed_2064 - alpha/beta fold family hydrolase 2061 47.02 0 2499849..2501222 - 457 157375202 - Ssed_2065 - NadC family transporter 2062 44.65 0 2501969..2502604 + 211 157375203 - Ssed_2066 - TetR family transcriptional regulator 2063 46.90 0 2502628..2504904 + 758 157375204 - Ssed_2067 - acyl-CoA dehydrogenase 2064 45.90 0 2505238..2506677 - 479 157375205 - Ssed_2068 - pyruvate kinase 2065 45.96 0 2506862..2507716 - 284 157375206 - Ssed_2069 - DNA-binding transcriptional regulator HexR 2066 45.08 0 2508026..2509498 + 490 157375207 - Ssed_2070 - glucose-6-phosphate 1-dehydrogenase 2067 45.78 0 2509511..2510209 + 232 157375208 - Ssed_2071 - hypothetical protein 2068 49.10 0 2510219..2512045 + 608 157375209 - Ssed_2072 - phosphogluconate dehydratase 2069 47.98 0 2512063..2512704 + 213 157375210 - Ssed_2073 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 2070 44.56 0 2512795..2513364 - 189 157375211 - Ssed_2074 - ecotin precursor 2071 46.59 0 2513731..2514756 + 341 157375212 - Ssed_2075 - cation diffusion facilitator family transporter 2072 45.48 0 2514787..2515206 + 139 157375213 - Ssed_2076 - MarR family transcriptional regulator 2073 43.02 0 2515587..2516618 + 343 157375214 - Ssed_2077 - diguanylate cyclase 2074 51.10 +1 2516697..2519387 - 896 157375215 - Ssed_2078 - GCN5-related N-acetyltransferase 2075 50.96 +1 2519819..2520760 - 313 157375216 - Ssed_2079 - lipid kinase 2076 52.69 +1 2521360..2522475 + 371 157375217 - Ssed_2080 - cobalamin biosynthesis protein 2077 54.64 +2 2522475..2523131 + 218 157375218 - Ssed_2081 - precorrin-8X methylmutase 2078 50.12 0 2523128..2524384 + 418 157375219 - Ssed_2082 - precorrin-6Y C(5,15)-methyltransferase (decarboxylating) 2079 53.49 +1 2524381..2525139 + 252 157375220 - Ssed_2083 - precorrin-2 methyltransferase 2080 52.91 +1 2525139..2526665 + 508 157375221 - Ssed_2084 - cobalamin biosynthesis protein CbiG-like protein 2081 48.53 0 2526776..2527591 + 271 157375222 - Ssed_2085 - cobalamin biosynthesis protein CbiK Co2+ chelatase-like protein 2082 49.31 0 2527588..2528451 + 287 157375223 - Ssed_2086 - precorrin-3B C(17)-methyltransferase 2083 48.32 0 2528448..2529221 + 257 157375224 - Ssed_2087 - precorrin-3 methylase 2084 54.46 +2 2529218..2530585 + 455 157375225 - Ssed_2088 - uroporphyrinogen-III methylase-like protein 2085 51.32 +1 2530575..2531480 + 301 157375226 - Ssed_2089 - cobD; cobalamin biosynthetic protein 2086 51.47 +1 2531477..2532595 + 372 157375227 - Ssed_2090 - cobalamin biosynthetic protein CobC 2087 42.14 -1 2532946..2533683 + 245 157375228 - Ssed_2091 - hypothetical protein 2088 48.77 0 2534170..2534940 + 256 157375229 - Ssed_2092 - ABC cobalt transporter, periplasmic binding protein CbiN 2089 46.53 0 2534950..2535555 + 201 157375230 - Ssed_2093 - cobalamin (vitamin B12) biosynthesis CbiM protein 2090 49.20 0 2535548..2536108 + 186 157375231 - Ssed_2094 - hypothetical protein 2091 47.79 0 2536105..2536872 + 255 157375232 - Ssed_2095 - ABC-type cobalt transport system permease component CbiQ and related transporter-like protein 2092 46.40 0 2536919..2537584 + 221 157375233 - Ssed_2096 - ABC transporter related 2093 34.89 -2 2537859..2538755 + 298 157375234 - Ssed_2097 - hypothetical protein 2094 46.91 0 2538866..2539675 - 269 157375235 - Ssed_2098 - hypothetical protein 2095 45.39 0 2540616..2540897 - 93 157375236 - Ssed_2099 - reductive dehalogenase anchoring protein, putative 2096 46.74 0 2540904..2542328 - 474 157375237 - Ssed_2100 - tetrachloroethene dehalogenase 2097 40.90 -1 2542457..2543368 - 303 157375238 - Ssed_2101 - hypothetical protein 2098 40.54 -1 2543947..2545056 + 369 157375239 - Ssed_2102 - hypothetical protein 2099 47.83 0 2545094..2546617 + 507 157375240 - Ssed_2103 - hypothetical protein 2100 44.98 0 2546617..2546925 + 102 157375241 - Ssed_2104 - hypothetical protein 2101 42.71 -1 2547010..2548236 + 408 157375242 - Ssed_2105 - hypothetical protein 2102 38.47 -2 2548518..2549393 + 291 157375243 - Ssed_2106 - hypothetical protein 2103 40.55 -1 2549490..2550251 - 253 157375244 - Ssed_2107 - amino acid ABC transporter periplasmic protein 2104 47.19 0 2550465..2551034 + 189 157375245 - Ssed_2108 - fructose-2 6-bisphosphatase-like protein 2105 39.07 -2 2551794..2552438 + 214 157375246 - Ssed_2109 - hypothetical protein 2106 45.25 0 2553316..2553978 + 220 157375247 - Ssed_2110 - GntR family transcriptional regulator 2107 51.54 +1 2554047..2554925 + 292 157375248 - Ssed_2111 - 2-methylisocitrate lyase 2108 49.33 0 2555063..2556187 + 374 157375249 - Ssed_2112 - 2-methylcitrate synthase 2109 51.13 +1 2556254..2558860 + 868 157375250 - Ssed_2113 - aconitate hydratase 2110 50.74 +1 2558973..2560190 + 405 157375251 - Ssed_2114 - putative AcnD-accessory protein PrpF 2111 46.97 0 2560368..2562017 - 549 157375252 - Ssed_2115 - ABC transporter ATPase 2112 45.31 0 2562300..2562800 + 166 157375253 - Ssed_2116 - hypothetical protein 2113 44.52 0 2564557..2565933 - 458 157375254 - Ssed_2117 - MATE efflux family protein 2114 42.02 -1 2565948..2566580 + 210 157375255 - Ssed_2118 - riboflavin synthase subunit alpha 2115 41.29 -1 2566622..2566822 - 66 157375256 - Ssed_2119 - hypothetical protein 2116 44.38 0 2567679..2569607 + 642 157375257 - Ssed_2120 - threonyl-tRNA synthetase 2117 41.67 -1 2569818..2570153 + 111 157375258 - Ssed_2121 - translation initiation factor IF-3 2118 42.05 -1 2570237..2570431 + 64 157375259 - Ssed_2122 - 50S ribosomal protein L35 2119 41.39 -1 2570450..2570809 + 119 157375260 - Ssed_2123 - 50S ribosomal protein L20 2120 46.27 0 2571083..2572033 - 316 157375261 - Ssed_2124 - thioredoxin reductase 2121 46.15 0 2572169..2573284 - 371 157375262 - Ssed_2125 - alanine dehydrogenase 2122 38.10 -2 2573465..2573968 + 167 157375263 - Ssed_2126 - leucine-responsive transcriptional regulator 2123 46.86 0 2574152..2576665 + 837 157375264 - Ssed_2127 - cell division protein FtsK/SpoIIIE 2124 44.50 0 2576780..2577406 + 208 157375265 - Ssed_2128 - outer membrane lipoprotein carrier protein LolA 2125 49.10 0 2577416..2578747 + 443 157375266 - Ssed_2129 - recombination factor protein RarA 2126 41.33 -1 2578740..2579114 + 124 157375267 - Ssed_2130 - CrcB protein 2127 45.77 0 2579133..2580419 + 428 157375268 - Ssed_2131 - seryl-tRNA synthetase 2128 45.54 0 2580854..2581189 - 111 157375269 - Ssed_2132 - DsrC family protein 2129 44.91 0 2581300..2581515 - 71 157375270 - Ssed_2133 - DsrH family protein 2130 46.46 0 2581581..2581961 - 126 157375271 - Ssed_2134 - DsrE family protein 2131 46.92 0 2582008..2582397 - 129 157375272 - Ssed_2135 - DsrE family protein 2132 44.09 0 2582563..2583222 - 219 157375273 - Ssed_2136 - hypothetical protein 2133 46.95 0 2583472..2584374 - 300 157375274 - Ssed_2137 - putative DNA-binding transcriptional regulator 2134 43.48 0 2584412..2585752 + 446 157375275 - Ssed_2138 - inner membrane transport protein YdhC 2135 48.81 0 2586794..2588008 - 404 157375276 - Ssed_2139 - hypothetical protein 2136 47.31 0 2588337..2590211 - 624 157375277 - Ssed_2140 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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