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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2004 50.48 +1 2429089..2429613 + 174 157375145 - Ssed_2008 - DTW domain-containing protein 2005 47.24 0 2429778..2433242 - 1154 157375146 - Ssed_2009 - hypothetical protein 2006 44.07 0 2433269..2434162 - 297 157375147 - Ssed_2010 - hypothetical protein 2007 45.95 0 2434913..2435023 + 36 157375148 - Ssed_2011 - hypothetical protein 2008 41.70 -1 2435236..2435916 - 226 157375149 - Ssed_2012 - hemolysin III family channel protein 2009 48.80 0 2436682..2438640 + 652 157375150 - Ssed_2013 - thiamine biosynthesis protein ThiC 2010 50.12 0 2438644..2440317 + 557 157375151 - Ssed_2014 - phosphomethylpyrimidine kinase, thiamine-phosphate diphosphorylase 2011 47.10 0 2440310..2441188 + 292 157375152 - Ssed_2015 - UBA/ThiF-type NAD/FAD binding protein 2012 48.78 0 2441175..2441420 + 81 157375153 - Ssed_2016 - thiamine biosynthesis protein ThiS 2013 51.63 +1 2441422..2442186 + 254 157375154 - Ssed_2017 - thiazole biosynthesis family protein 2014 46.84 0 2442223..2443347 + 374 157375155 - Ssed_2018 - thiamine biosynthesis protein ThiH 2015 48.52 0 2443572..2443841 + 89 157375156 - Ssed_2019 - methyl-accepting chemotaxis protein 2016 48.82 0 2443847..2445286 + 479 157375157 - Ssed_2020 - SrpA-related protein 2017 46.44 0 2445314..2446213 - 299 157375158 - Ssed_2021 - LysR family transcriptional regulator 2018 43.38 0 2446521..2447615 - 364 157375159 - Ssed_2022 - hypothetical protein 2019 45.68 0 2447569..2449317 - 582 157375160 - Ssed_2023 - response regulator receiver protein 2020 47.25 0 2449280..2450242 - 320 157375161 - Ssed_2024 - alpha-L-glutamate ligase-like protein 2021 46.69 0 2450245..2451756 - 503 157375162 - Ssed_2025 - gonadoliberin III-related protein 2022 44.49 0 2451768..2452511 - 247 157375163 - Ssed_2026 - hypothetical protein 2023 45.22 0 2452610..2453602 - 330 157375164 - Ssed_2027 - putative methyltransferase 2024 42.35 -1 2453706..2454437 - 243 157375165 - Ssed_2028 - putative methyltransferase 2025 43.19 0 2454584..2457382 + 932 157375166 - Ssed_2029 - diguanylate cyclase 2026 46.25 0 2457554..2459341 + 595 157375167 - Ssed_2030 - aspartyl-tRNA synthetase 2027 48.06 0 2459429..2460175 + 248 157375168 - Ssed_2031 - hypothetical protein 2028 48.08 0 2460179..2460700 + 173 157375169 - Ssed_2032 - crossover junction endodeoxyribonuclease 2029 45.31 0 2460697..2461314 + 205 157375170 - Ssed_2033 - Holliday junction DNA helicase RuvA 2030 48.57 0 2461338..2462354 + 338 157375171 - Ssed_2034 - Holliday junction DNA helicase B 2031 40.41 -1 2462594..2463610 + 338 157375172 - Ssed_2035 - hypothetical protein 2032 45.57 0 2464419..2466944 + 841 157375173 - Ssed_2036 - TonB-dependent receptor 2033 46.47 0 2467287..2467697 - 136 157375174 - Ssed_2037 - lactoylglutathione lyase 2034 45.85 0 2468359..2468997 - 212 157375175 - Ssed_2038 - DNA-(apurinic or apyrimidinic site) lyase 2035 49.93 0 2469030..2469740 - 236 157375176 - Ssed_2039 - SoxR-reducing system protein RsxE 2036 42.74 -1 2469737..2470363 - 208 157375177 - Ssed_2040 - electron transport complex protein RnfG 2037 47.67 0 2470393..2471445 - 350 157375178 - Ssed_2041 - electron transport complex, RnfABCDGE type, D subunit 2038 49.47 0 2471449..2473977 - 842 157375179 - Ssed_2042 - electron transport complex protein RnfC 2039 49.47 0 2473971..2474540 - 189 157375180 - Ssed_2043 - electron transport complex, RnfABCDGE type, B subunit 2040 46.29 0 2474543..2475121 - 192 157375181 - Ssed_2044 - Na(+)-translocating NADH-quinone reductase subunit E 2041 41.86 -1 2475230..2477128 - 632 157375182 - Ssed_2045 - diguanylate cyclase/phosphodiesterase 2042 45.51 0 2479256..2481283 + 675 157375183 - Ssed_2046 - excinuclease ABC subunit B 2043 47.67 0 2481323..2481838 - 171 157375184 - Ssed_2047 - rhomboid family protein 2044 44.92 0 2481935..2482633 - 232 157375185 - Ssed_2048 - ExsB protein 2045 45.74 0 2482821..2483489 + 222 157375186 - Ssed_2049 - radical activating enzyme 2046 47.27 0 2483486..2484547 - 353 157375187 - Ssed_2050 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2047 45.24 0 2485769..2486272 + 167 157375188 - Ssed_2051 - hypothetical protein 2048 40.62 -1 2486551..2486838 + 95 157375189 - Ssed_2052 - hypothetical protein 2049 44.12 0 2487012..2489180 + 722 157375190 - Ssed_2053 - putative diguanylate phosphodiesterase 2050 44.86 0 2489235..2489720 - 161 157375191 - Ssed_2054 - SecC motif-containing protein 2051 41.58 -1 2489710..2490279 - 189 157375192 - Ssed_2055 - hypothetical protein 2052 44.84 0 2490380..2490970 + 196 157375193 - Ssed_2056 - Smr protein/MutS2 2053 47.49 0 2491071..2492906 - 611 157375194 - Ssed_2057 - peptidyl-dipeptidase A 2054 44.01 0 2493092..2494318 - 408 157375195 - Ssed_2058 - NAD/FAD-binding protein-like protein 2055 44.90 0 2494356..2495885 - 509 157375196 - Ssed_2059 - hypothetical protein 2056 41.50 -1 2496175..2496774 + 199 157375197 - Ssed_2060 - hypothetical protein 2057 39.11 -2 2497101..2497325 + 74 157375198 - Ssed_2061 - hypothetical protein 2058 45.32 0 2497435..2498352 + 305 157375199 - Ssed_2062 - hypothetical protein 2059 45.30 0 2498422..2498889 + 155 157375200 - Ssed_2063 - hypothetical protein 2060 41.31 -1 2498889..2499740 + 283 157375201 - Ssed_2064 - alpha/beta fold family hydrolase 2061 47.02 0 2499849..2501222 - 457 157375202 - Ssed_2065 - NadC family transporter 2062 44.65 0 2501969..2502604 + 211 157375203 - Ssed_2066 - TetR family transcriptional regulator 2063 46.90 0 2502628..2504904 + 758 157375204 - Ssed_2067 - acyl-CoA dehydrogenase 2064 45.90 0 2505238..2506677 - 479 157375205 - Ssed_2068 - pyruvate kinase 2065 45.96 0 2506862..2507716 - 284 157375206 - Ssed_2069 - DNA-binding transcriptional regulator HexR 2066 45.08 0 2508026..2509498 + 490 157375207 - Ssed_2070 - glucose-6-phosphate 1-dehydrogenase 2067 45.78 0 2509511..2510209 + 232 157375208 - Ssed_2071 - hypothetical protein 2068 49.10 0 2510219..2512045 + 608 157375209 - Ssed_2072 - phosphogluconate dehydratase 2069 47.98 0 2512063..2512704 + 213 157375210 - Ssed_2073 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 2070 44.56 0 2512795..2513364 - 189 157375211 - Ssed_2074 - ecotin precursor 2071 46.59 0 2513731..2514756 + 341 157375212 - Ssed_2075 - cation diffusion facilitator family transporter 2072 45.48 0 2514787..2515206 + 139 157375213 - Ssed_2076 - MarR family transcriptional regulator 2073 43.02 0 2515587..2516618 + 343 157375214 - Ssed_2077 - diguanylate cyclase 2074 51.10 +1 2516697..2519387 - 896 157375215 - Ssed_2078 - GCN5-related N-acetyltransferase 2075 50.96 +1 2519819..2520760 - 313 157375216 - Ssed_2079 - lipid kinase 2076 52.69 +1 2521360..2522475 + 371 157375217 - Ssed_2080 - cobalamin biosynthesis protein 2077 54.64 +2 2522475..2523131 + 218 157375218 - Ssed_2081 - precorrin-8X methylmutase 2078 50.12 0 2523128..2524384 + 418 157375219 - Ssed_2082 - precorrin-6Y C(5,15)-methyltransferase (decarboxylating) 2079 53.49 +1 2524381..2525139 + 252 157375220 - Ssed_2083 - precorrin-2 methyltransferase 2080 52.91 +1 2525139..2526665 + 508 157375221 - Ssed_2084 - cobalamin biosynthesis protein CbiG-like protein 2081 48.53 0 2526776..2527591 + 271 157375222 - Ssed_2085 - cobalamin biosynthesis protein CbiK Co2+ chelatase-like protein 2082 49.31 0 2527588..2528451 + 287 157375223 - Ssed_2086 - precorrin-3B C(17)-methyltransferase 2083 48.32 0 2528448..2529221 + 257 157375224 - Ssed_2087 - precorrin-3 methylase 2084 54.46 +2 2529218..2530585 + 455 157375225 - Ssed_2088 - uroporphyrinogen-III methylase-like protein 2085 51.32 +1 2530575..2531480 + 301 157375226 - Ssed_2089 - cobD; cobalamin biosynthetic protein 2086 51.47 +1 2531477..2532595 + 372 157375227 - Ssed_2090 - cobalamin biosynthetic protein CobC 2087 42.14 -1 2532946..2533683 + 245 157375228 - Ssed_2091 - hypothetical protein 2088 48.77 0 2534170..2534940 + 256 157375229 - Ssed_2092 - ABC cobalt transporter, periplasmic binding protein CbiN 2089 46.53 0 2534950..2535555 + 201 157375230 - Ssed_2093 - cobalamin (vitamin B12) biosynthesis CbiM protein 2090 49.20 0 2535548..2536108 + 186 157375231 - Ssed_2094 - hypothetical protein 2091 47.79 0 2536105..2536872 + 255 157375232 - Ssed_2095 - ABC-type cobalt transport system permease component CbiQ and related transporter-like protein 2092 46.40 0 2536919..2537584 + 221 157375233 - Ssed_2096 - ABC transporter related 2093 34.89 -2 2537859..2538755 + 298 157375234 - Ssed_2097 - hypothetical protein 2094 46.91 0 2538866..2539675 - 269 157375235 - Ssed_2098 - hypothetical protein 2095 45.39 0 2540616..2540897 - 93 157375236 - Ssed_2099 - reductive dehalogenase anchoring protein, putative 2096 46.74 0 2540904..2542328 - 474 157375237 - Ssed_2100 - tetrachloroethene dehalogenase 2097 40.90 -1 2542457..2543368 - 303 157375238 - Ssed_2101 - hypothetical protein 2098 40.54 -1 2543947..2545056 + 369 157375239 - Ssed_2102 - hypothetical protein 2099 47.83 0 2545094..2546617 + 507 157375240 - Ssed_2103 - hypothetical protein 2100 44.98 0 2546617..2546925 + 102 157375241 - Ssed_2104 - hypothetical protein 2101 42.71 -1 2547010..2548236 + 408 157375242 - Ssed_2105 - hypothetical protein 2102 38.47 -2 2548518..2549393 + 291 157375243 - Ssed_2106 - hypothetical protein 2103 40.55 -1 2549490..2550251 - 253 157375244 - Ssed_2107 - amino acid ABC transporter periplasmic protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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