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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1976 44.44 0 2394344..2395891 - 515 157375117 - Ssed_1980 - hypothetical protein 1977 46.53 0 2396144..2397166 + 340 157375118 - Ssed_1981 - putative sulfite oxidase subunit YedY 1978 43.81 0 2397180..2397809 + 209 157375119 - Ssed_1982 - putative sulfite oxidase subunit YedZ 1979 45.17 0 2397997..2399643 + 548 157375120 - Ssed_1983 - methyl-accepting chemotaxis sensory transducer 1980 44.85 0 2399804..2400298 + 164 157375121 - Ssed_1984 - ribonuclease activity regulator protein RraA 1981 45.32 0 2400317..2402152 + 611 157375122 - Ssed_1985 - AsmA family protein 1982 48.47 0 2402152..2402739 + 195 157375123 - Ssed_1986 - intracellular proteinase inhibitor domain-containing protein 1983 46.95 0 2402906..2404462 - 518 157375124 - Ssed_1987 - methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor 1984 47.63 0 2404695..2406254 - 519 157375125 - Ssed_1988 - lytic transglycosylase, catalytic 1985 46.76 0 2406343..2407161 - 272 157375126 - Ssed_1989 - hydroxyacylglutathione hydrolase 1986 49.12 0 2407343..2408077 + 244 157375127 - Ssed_1990 - hypothetical protein 1987 47.27 0 2408187..2409083 + 298 157375128 - Ssed_1991 - LysR family transcriptional regulator 1988 47.13 0 2409189..2409659 - 156 157375129 - Ssed_1992 - ribonuclease H 1989 44.86 0 2409727..2410455 + 242 157375130 - Ssed_1993 - DNA-directed DNA polymerase 1990 45.71 0 2410466..2411782 + 438 157375131 - Ssed_1994 - hypothetical protein 1991 47.64 0 2413006..2413830 - 274 157375132 - Ssed_1995 - purine nucleoside phosphorylase 1992 43.01 -1 2413963..2414892 + 309 157375133 - Ssed_1996 - HTH-type transcriptional regulator XapR 1993 45.42 0 2414974..2416587 - 537 157375134 - Ssed_1997 - peptidase M28 1994 48.30 0 2416856..2418706 + 616 157375135 - Ssed_1998 - sodium/hydrogen exchanger 1995 48.00 0 2418841..2421288 - 815 157375136 - Ssed_1999 - acyl-CoA dehydrogenase 1996 45.38 0 2421529..2422308 + 259 157375137 - Ssed_2000 - glutamine amidotransferase, class-II 1997 39.51 -1 2422346..2422588 + 80 157375138 - Ssed_2001 - hypothetical protein 1998 44.66 0 2422678..2423445 - 255 157375139 - Ssed_2002 - hypothetical protein 1999 45.14 0 2423649..2424029 - 126 157375140 - Ssed_2003 - methylated-DNA-(protein)-cysteine S-methyltransferase 2000 46.43 0 2424216..2424902 + 228 157375141 - Ssed_2004 - hypothetical protein 2001 45.88 0 2424950..2426671 - 573 157375142 - Ssed_2005 - major facilitator transporter 2002 44.92 0 2426911..2427402 + 163 157375143 - Ssed_2006 - peptide deformylase 2003 46.33 0 2427516..2428931 - 471 157375144 - Ssed_2007 - putative two-component system sensor kinase 2004 50.48 +1 2429089..2429613 + 174 157375145 - Ssed_2008 - DTW domain-containing protein 2005 47.24 0 2429778..2433242 - 1154 157375146 - Ssed_2009 - hypothetical protein 2006 44.07 0 2433269..2434162 - 297 157375147 - Ssed_2010 - hypothetical protein 2007 45.95 0 2434913..2435023 + 36 157375148 - Ssed_2011 - hypothetical protein 2008 41.70 -1 2435236..2435916 - 226 157375149 - Ssed_2012 - hemolysin III family channel protein 2009 48.80 0 2436682..2438640 + 652 157375150 - Ssed_2013 - thiamine biosynthesis protein ThiC 2010 50.12 0 2438644..2440317 + 557 157375151 - Ssed_2014 - phosphomethylpyrimidine kinase, thiamine-phosphate diphosphorylase 2011 47.10 0 2440310..2441188 + 292 157375152 - Ssed_2015 - UBA/ThiF-type NAD/FAD binding protein 2012 48.78 0 2441175..2441420 + 81 157375153 - Ssed_2016 - thiamine biosynthesis protein ThiS 2013 51.63 +1 2441422..2442186 + 254 157375154 - Ssed_2017 - thiazole biosynthesis family protein 2014 46.84 0 2442223..2443347 + 374 157375155 - Ssed_2018 - thiamine biosynthesis protein ThiH 2015 48.52 0 2443572..2443841 + 89 157375156 - Ssed_2019 - methyl-accepting chemotaxis protein 2016 48.82 0 2443847..2445286 + 479 157375157 - Ssed_2020 - SrpA-related protein 2017 46.44 0 2445314..2446213 - 299 157375158 - Ssed_2021 - LysR family transcriptional regulator 2018 43.38 0 2446521..2447615 - 364 157375159 - Ssed_2022 - hypothetical protein 2019 45.68 0 2447569..2449317 - 582 157375160 - Ssed_2023 - response regulator receiver protein 2020 47.25 0 2449280..2450242 - 320 157375161 - Ssed_2024 - alpha-L-glutamate ligase-like protein 2021 46.69 0 2450245..2451756 - 503 157375162 - Ssed_2025 - gonadoliberin III-related protein 2022 44.49 0 2451768..2452511 - 247 157375163 - Ssed_2026 - hypothetical protein 2023 45.22 0 2452610..2453602 - 330 157375164 - Ssed_2027 - putative methyltransferase 2024 42.35 -1 2453706..2454437 - 243 157375165 - Ssed_2028 - putative methyltransferase 2025 43.19 0 2454584..2457382 + 932 157375166 - Ssed_2029 - diguanylate cyclase 2026 46.25 0 2457554..2459341 + 595 157375167 - Ssed_2030 - aspartyl-tRNA synthetase 2027 48.06 0 2459429..2460175 + 248 157375168 - Ssed_2031 - hypothetical protein 2028 48.08 0 2460179..2460700 + 173 157375169 - Ssed_2032 - crossover junction endodeoxyribonuclease 2029 45.31 0 2460697..2461314 + 205 157375170 - Ssed_2033 - Holliday junction DNA helicase RuvA 2030 48.57 0 2461338..2462354 + 338 157375171 - Ssed_2034 - Holliday junction DNA helicase B 2031 40.41 -1 2462594..2463610 + 338 157375172 - Ssed_2035 - hypothetical protein 2032 45.57 0 2464419..2466944 + 841 157375173 - Ssed_2036 - TonB-dependent receptor 2033 46.47 0 2467287..2467697 - 136 157375174 - Ssed_2037 - lactoylglutathione lyase 2034 45.85 0 2468359..2468997 - 212 157375175 - Ssed_2038 - DNA-(apurinic or apyrimidinic site) lyase 2035 49.93 0 2469030..2469740 - 236 157375176 - Ssed_2039 - SoxR-reducing system protein RsxE 2036 42.74 -1 2469737..2470363 - 208 157375177 - Ssed_2040 - electron transport complex protein RnfG 2037 47.67 0 2470393..2471445 - 350 157375178 - Ssed_2041 - electron transport complex, RnfABCDGE type, D subunit 2038 49.47 0 2471449..2473977 - 842 157375179 - Ssed_2042 - electron transport complex protein RnfC 2039 49.47 0 2473971..2474540 - 189 157375180 - Ssed_2043 - electron transport complex, RnfABCDGE type, B subunit 2040 46.29 0 2474543..2475121 - 192 157375181 - Ssed_2044 - Na(+)-translocating NADH-quinone reductase subunit E 2041 41.86 -1 2475230..2477128 - 632 157375182 - Ssed_2045 - diguanylate cyclase/phosphodiesterase 2042 45.51 0 2479256..2481283 + 675 157375183 - Ssed_2046 - excinuclease ABC subunit B 2043 47.67 0 2481323..2481838 - 171 157375184 - Ssed_2047 - rhomboid family protein 2044 44.92 0 2481935..2482633 - 232 157375185 - Ssed_2048 - ExsB protein 2045 45.74 0 2482821..2483489 + 222 157375186 - Ssed_2049 - radical activating enzyme 2046 47.27 0 2483486..2484547 - 353 157375187 - Ssed_2050 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2047 45.24 0 2485769..2486272 + 167 157375188 - Ssed_2051 - hypothetical protein 2048 40.62 -1 2486551..2486838 + 95 157375189 - Ssed_2052 - hypothetical protein 2049 44.12 0 2487012..2489180 + 722 157375190 - Ssed_2053 - putative diguanylate phosphodiesterase 2050 44.86 0 2489235..2489720 - 161 157375191 - Ssed_2054 - SecC motif-containing protein 2051 41.58 -1 2489710..2490279 - 189 157375192 - Ssed_2055 - hypothetical protein 2052 44.84 0 2490380..2490970 + 196 157375193 - Ssed_2056 - Smr protein/MutS2 2053 47.49 0 2491071..2492906 - 611 157375194 - Ssed_2057 - peptidyl-dipeptidase A 2054 44.01 0 2493092..2494318 - 408 157375195 - Ssed_2058 - NAD/FAD-binding protein-like protein 2055 44.90 0 2494356..2495885 - 509 157375196 - Ssed_2059 - hypothetical protein 2056 41.50 -1 2496175..2496774 + 199 157375197 - Ssed_2060 - hypothetical protein 2057 39.11 -2 2497101..2497325 + 74 157375198 - Ssed_2061 - hypothetical protein 2058 45.32 0 2497435..2498352 + 305 157375199 - Ssed_2062 - hypothetical protein 2059 45.30 0 2498422..2498889 + 155 157375200 - Ssed_2063 - hypothetical protein 2060 41.31 -1 2498889..2499740 + 283 157375201 - Ssed_2064 - alpha/beta fold family hydrolase 2061 47.02 0 2499849..2501222 - 457 157375202 - Ssed_2065 - NadC family transporter 2062 44.65 0 2501969..2502604 + 211 157375203 - Ssed_2066 - TetR family transcriptional regulator 2063 46.90 0 2502628..2504904 + 758 157375204 - Ssed_2067 - acyl-CoA dehydrogenase 2064 45.90 0 2505238..2506677 - 479 157375205 - Ssed_2068 - pyruvate kinase 2065 45.96 0 2506862..2507716 - 284 157375206 - Ssed_2069 - DNA-binding transcriptional regulator HexR 2066 45.08 0 2508026..2509498 + 490 157375207 - Ssed_2070 - glucose-6-phosphate 1-dehydrogenase 2067 45.78 0 2509511..2510209 + 232 157375208 - Ssed_2071 - hypothetical protein 2068 49.10 0 2510219..2512045 + 608 157375209 - Ssed_2072 - phosphogluconate dehydratase 2069 47.98 0 2512063..2512704 + 213 157375210 - Ssed_2073 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 2070 44.56 0 2512795..2513364 - 189 157375211 - Ssed_2074 - ecotin precursor 2071 46.59 0 2513731..2514756 + 341 157375212 - Ssed_2075 - cation diffusion facilitator family transporter 2072 45.48 0 2514787..2515206 + 139 157375213 - Ssed_2076 - MarR family transcriptional regulator 2073 43.02 0 2515587..2516618 + 343 157375214 - Ssed_2077 - diguanylate cyclase 2074 51.10 +1 2516697..2519387 - 896 157375215 - Ssed_2078 - GCN5-related N-acetyltransferase 2075 50.96 +1 2519819..2520760 - 313 157375216 - Ssed_2079 - lipid kinase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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