version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 153 50.94 +1 172513..175665 + 1050 157373294 - Ssed_0153 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 154 42.18 -1 175802..176479 - 225 157373295 - Ssed_0154 - glutathione S-transferase domain-containing protein 155 40.20 -1 176652..177554 + 300 157373296 - Ssed_0155 - MscS mechanosensitive ion channel 156 52.32 +1 177647..179263 - 538 157373297 - Ssed_0156 - AbgT putative transporter 157 45.96 0 180321..180890 + 189 157373298 - Ssed_0157 - LemA family protein 158 45.99 0 180949..181959 + 336 157373299 - Ssed_0158 - hypothetical protein 159 50.00 0 181968..182705 + 245 157373300 - Ssed_0159 - lytic transglycosylase, catalytic 160 48.54 0 182868..184274 - 468 157373301 - Ssed_0160 - multidrug efflux pump VmrA 161 48.21 0 184437..185330 + 297 157373302 - Ssed_0161 - putative transcriptional regulator 162 49.19 0 185416..185787 + 123 157373303 - Ssed_0162 - hypothetical protein 163 46.03 0 185896..186738 - 280 157373304 - Ssed_0163 - hypothetical protein 164 51.61 +1 186935..187711 + 258 157373305 - Ssed_0164 - hypothetical protein 165 45.74 0 187715..188101 - 128 157373306 - Ssed_0165 - hypothetical protein 166 46.60 0 188256..189107 - 283 157373307 - Ssed_0166 - hypothetical protein 167 51.03 +1 189301..190611 - 436 157373308 - Ssed_0167 - osmolarity sensor protein 168 49.86 0 190672..191397 - 241 157373309 - Ssed_0168 - osmolarity response regulator 169 42.92 -1 191748..191966 - 72 157373310 - Ssed_0169 - hypothetical protein 170 50.41 +1 192343..192834 + 163 157373311 - Ssed_0170 - transcription elongation factor GreB 171 50.39 +1 193063..194862 + 599 157373312 - Ssed_0171 - thiamine pyrophosphate binding domain-containing protein 172 46.24 0 195071..195442 + 123 157373313 - Ssed_0172 - hypothetical protein 173 49.90 0 195536..197950 + 804 157373314 - Ssed_0173 - RNA-binding S1 domain-containing protein 174 48.14 0 198309..200321 + 670 157373315 - Ssed_0174 - sulfatase 175 48.81 0 200314..200817 - 167 157373316 - Ssed_0175 - hypothetical protein 176 51.95 +1 200878..201672 - 264 157373317 - Ssed_0176 - carboxylesterase 177 50.56 +1 201710..202510 + 266 157373318 - Ssed_0177 - competence protein ComF 178 47.82 0 202523..205069 - 848 157373319 - Ssed_0178 - peptidase M14, carboxypeptidase A 179 48.01 0 205299..205877 + 192 157373320 - Ssed_0179 - putative DNA uptake protein 180 47.68 0 206370..207707 - 445 157373321 - Ssed_0180 - MATE efflux family protein 181 47.93 0 207731..208792 + 353 157373322 - Ssed_0181 - polysaccharide deacetylase 182 50.58 +1 208820..209857 - 345 157373323 - Ssed_0182 - protein-glutamate methylesterase 183 44.37 0 209961..210803 - 280 157373324 - Ssed_0183 - protein-glutamate O-methyltransferase 184 46.60 0 210845..213436 - 863 157373325 - Ssed_0184 - methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor 185 44.02 0 213460..214011 - 183 157373326 - Ssed_0185 - CheW protein 186 46.64 0 214063..216129 - 688 157373327 - Ssed_0186 - CheA signal transduction histidine kinase 187 47.38 0 216175..216537 - 120 157373328 - Ssed_0187 - response regulator receiver protein 188 41.41 -1 216534..216830 - 98 157373329 - Ssed_0188 - hypothetical protein 189 45.66 0 217009..217665 - 218 157373330 - Ssed_0189 - electron transport protein SCO1/SenC 190 50.16 0 217720..218634 - 304 157373331 - Ssed_0190 - protoheme IX farnesyltransferase 191 46.81 0 218712..219698 - 328 157373332 - Ssed_0191 - cytochrome oxidase assembly 192 45.60 0 219698..220243 - 181 157373333 - Ssed_0192 - hypothetical protein 193 47.04 0 220444..221202 - 252 157373334 - Ssed_0193 - hypothetical protein 194 44.62 0 221213..221398 + 61 157373335 - Ssed_0194 - hypothetical protein 195 48.97 0 221470..222345 - 291 157373336 - Ssed_0195 - cytochrome c oxidase, subunit III 196 48.07 0 222342..222911 - 189 157373337 - Ssed_0196 - cytochrome C oxidase assembly protein 197 49.03 0 222914..224518 - 534 157373338 - Ssed_0197 - cytochrome-c oxidase 198 48.38 0 224528..226102 - 524 157373339 - Ssed_0198 - cytochrome-c oxidase 199 45.81 0 226521..227033 - 170 157373340 - Ssed_0199 - hypothetical protein 200 47.02 0 227030..227650 - 206 157373341 - Ssed_0200 - LexA repressor 201 47.28 0 227801..230224 + 807 157373342 - Ssed_0201 - glycerol-3-phosphate acyltransferase 202 49.01 0 230224..231480 + 418 157373343 - Ssed_0202 - aromatic amino acid transporter 203 46.78 0 231551..232576 - 341 157373344 - Ssed_0203 - AraC-type transcriptional regulator 204 52.38 +1 232705..233040 + 111 157373345 - Ssed_0204 - major facilitator superfamily permease 205 46.41 0 233033..234256 + 407 157373346 - Ssed_0205 - putative multidrug resistance efflux pump 206 48.19 0 234315..235505 - 396 157373347 - Ssed_0206 - GGDEF domain-containing protein 207 47.10 0 235685..236098 - 137 157373348 - Ssed_0207 - globin 208 50.82 +1 236322..237110 + 262 157373349 - Ssed_0208 - glyoxalase/bleomycin resistance protein/dioxygenase 209 47.94 0 237230..239263 + 677 157373350 - Ssed_0209 - methyl-accepting chemotaxis sensory transducer 210 50.57 +1 239331..242468 - 1045 157373351 - Ssed_0210 - CzcA family heavy metal efflux protein 211 48.18 0 242600..244552 - 650 157373352 - Ssed_0211 - membrane-fusion protein-like protein 212 45.77 0 244575..245153 - 192 157373353 - Ssed_0212 - hypothetical protein 213 46.52 0 245418..245819 - 133 157373354 - Ssed_0213 - hypothetical protein 214 42.72 -1 245985..246410 - 141 157373355 - Ssed_0214 - hypothetical protein 215 45.93 0 246604..247095 - 163 157373356 - Ssed_0215 - hypothetical protein 216 42.73 -1 247524..248087 + 187 157373357 - Ssed_0216 - tetraheme cytochrome c 217 37.80 -2 248722..249012 - 96 157373358 - Ssed_0217 - hypothetical protein 218 49.48 0 249075..249656 - 193 157373359 - Ssed_0218 - putative methyltransferase 219 50.83 +1 250086..251708 + 540 157373360 - Ssed_0219 - signal recognition particle-docking protein FtsY 220 46.03 0 251738..252430 + 230 157373361 - Ssed_0220 - cell division ATP-binding protein FtsE 221 49.17 0 252433..253398 + 321 157373362 - Ssed_0221 - hypothetical protein 222 47.20 0 253663..254520 + 285 157373363 - Ssed_0222 - RNA polymerase factor sigma-32 223 50.23 0 254948..256462 - 504 157373364 - Ssed_0223 - O-succinylbenzoate-CoA ligase 224 48.96 0 256472..257527 - 351 157373365 - Ssed_0224 - O-succinylbenzoate synthase 225 52.49 +1 257524..258306 - 260 157373366 - Ssed_0225 - alpha/beta hydrolase fold 226 51.81 +1 258306..260015 - 569 157373367 - Ssed_0226 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 227 50.79 +1 260780..261730 + 316 157373368 - Ssed_0227 - cytochrome c family protein 228 50.20 0 261745..263754 + 669 157373369 - Ssed_0228 - outer membrane protein 229 50.10 0 263789..266305 + 838 157373370 - Ssed_0229 - anaerobic dimethyl sulfoxide reductase subunit A 230 48.97 0 266320..266997 + 225 157373371 - Ssed_0230 - anaerobic dimethyl sulfoxide reductase, B subunit 231 48.18 0 267075..267734 + 219 157373372 - Ssed_0231 - cytoplasmic chaperone TorD family protein 232 46.12 0 267775..268251 + 158 157373373 - Ssed_0232 - hypothetical protein 233 41.30 -1 268291..269031 - 246 157373374 - Ssed_0233 - hypothetical protein 234 46.14 0 269290..269898 + 202 157373375 - Ssed_0234 - DsbA family thiol:disulfide interchange protein 235 51.10 +1 269907..270542 + 211 157373376 - Ssed_0235 - disulfide bond formation protein 236 48.66 0 270603..271346 + 247 157373377 - Ssed_0236 - hypothetical protein 237 47.54 0 271380..273083 + 567 157373378 - Ssed_0237 - arylsulfate sulfotransferase 238 43.64 0 273869..274867 + 332 157373379 - Ssed_0238 - transcriptional regulator-like protein 239 38.51 -2 275085..276050 - 321 157373380 - Ssed_0239 - LysR family transcriptional regulator 240 39.92 -1 276582..277082 + 166 157373381 - Ssed_0240 - hypothetical protein 241 46.84 0 277170..277643 + 157 157373382 - Ssed_0241 - hypothetical protein 242 49.56 0 277659..278336 + 225 157373383 - Ssed_0242 - twin-arginine translocation pathway signal 243 47.13 0 278333..279274 + 313 157373384 - Ssed_0243 - polysulphide reductase, NrfD 244 46.74 0 279296..279586 + 96 157373385 - Ssed_0244 - hypothetical protein 245 39.13 -2 279689..279826 - 45 157373386 - Ssed_0245 - AsnC family transcriptional regulator 246 44.88 0 280092..280697 + 201 157373387 - Ssed_0246 - methyltransferase type 11 247 47.46 0 280758..281210 - 150 157373388 - Ssed_0247 - hypothetical protein 248 48.89 0 281329..281913 - 194 157373389 - Ssed_0248 - hypothetical protein 249 45.05 0 282032..282748 + 238 157373390 - Ssed_0249 - hypothetical protein 250 51.66 +1 282807..284225 + 472 157373391 - Ssed_0250 - Sel1 domain-containing protein 251 48.04 0 284323..285573 + 416 157373392 - Ssed_0251 - hypothetical protein 252 48.78 0 285705..286073 - 122 157373393 - Ssed_0252 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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