version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1730 51.16 +1 2077861..2080233 - 790 157374871 - Ssed_1732 - hypothetical protein 1731 40.66 -1 2081041..2081436 + 131 157374872 - Ssed_1733 - hypothetical protein 1732 51.55 +1 2082121..2082894 - 257 157374873 - Ssed_1734 - putative sulfate transport protein CysZ 1733 51.67 +1 2083099..2083998 + 299 157374874 - Ssed_1735 - chromosome segregation protein SMC 1734 49.04 0 2084070..2086514 + 814 157374875 - Ssed_1736 - chromosome segregation protein SMC 1735 47.86 0 2086538..2087563 + 341 157374876 - Ssed_1737 - cell division protein ZipA 1736 52.26 +1 2087653..2089665 + 670 157374877 - Ssed_1738 - DNA ligase (NAD(+)) 1737 47.33 0 2089796..2090281 + 161 157374878 - Ssed_1739 - hypothetical protein 1738 47.43 0 2090939..2092144 + 401 157374879 - Ssed_1740 - metal dependent phosphohydrolase 1739 49.36 0 2092221..2093081 + 286 157374880 - Ssed_1741 - NAD-dependent epimerase/dehydratase 1740 48.66 0 2093116..2093748 + 210 157374881 - Ssed_1742 - DsbA oxidoreductase 1741 47.32 0 2094053..2094481 + 142 157374882 - Ssed_1743 - prophage MuSo1, positive regulator of late transcription, putative 1742 51.11 +1 2094866..2095000 + 44 157374883 - Ssed_1744 - prophage MuSo1, protein Gp32, putative 1743 41.95 -1 2095315..2095581 + 88 157374884 - Ssed_1745 - hypothetical protein 1744 48.34 0 2095609..2097327 + 572 157374885 - Ssed_1746 - Na+/solute symporter 1745 50.73 +1 2097541..2100960 + 1139 157374886 - Ssed_1747 - hypothetical protein 1746 48.91 0 2100963..2101790 + 275 157374887 - Ssed_1748 - hypothetical protein 1747 47.91 0 2101889..2102437 + 182 157374888 - Ssed_1749 - CDP-alcohol phosphatidyltransferase 1748 41.05 -1 2102482..2103012 + 176 157374889 - Ssed_1750 - hypothetical protein 1749 50.16 0 2103179..2105026 + 615 157374890 - Ssed_1751 - cyclic nucleotide-binding protein 1750 49.05 0 2105027..2105713 + 228 157374891 - Ssed_1752 - exonuclease, RNase T and DNA polymerase III 1751 46.63 0 2105705..2107456 - 583 157374892 - Ssed_1753 - sensor protein LuxQ 1752 43.82 0 2107524..2108057 - 177 157374893 - Ssed_1754 - hypothetical protein 1753 50.95 +1 2108253..2108831 + 192 157374894 - Ssed_1755 - hypothetical protein 1754 50.87 +1 2109325..2110869 + 514 157374895 - Ssed_1756 - NAD(P) transhydrogenase subunit alpha 1755 49.04 0 2110884..2112284 + 466 157374896 - Ssed_1757 - NAD(P)(+) transhydrogenase (AB-specific) 1756 49.95 0 2112880..2113944 - 354 157374897 - Ssed_1758 - 3-oxoacyl-(acyl carrier protein) synthase III 1757 46.28 0 2114040..2114711 - 223 157374898 - Ssed_1759 - GntR family transcriptional regulator 1758 56.83 +2 2114840..2116405 - 521 157374899 - Ssed_1760 - aldehyde dehydrogenase 1759 51.20 +1 2116462..2117463 - 333 157374900 - Ssed_1761 - proline racemase 1760 48.09 0 2117629..2118543 - 304 157374901 - Ssed_1762 - dihydrodipicolinate synthase 1761 53.03 +1 2118735..2119775 + 346 157374902 - Ssed_1763 - proline racemase 1762 52.09 +1 2119955..2121223 + 422 157374903 - Ssed_1764 - D-amino-acid dehydrogenase 1763 37.08 -2 2121662..2122435 + 257 157374904 - Ssed_1765 - methyltransferase type 11 1764 44.05 0 2122993..2123328 + 111 157374905 - Ssed_1766 - hypothetical protein 1765 38.12 -2 2123590..2124633 - 347 157374906 - Ssed_1767 - hypothetical protein 1766 45.32 0 2124946..2125896 + 316 157374907 - Ssed_1768 - meta-pathway phenol degradation-like protein 1767 34.26 -2 2126621..2126836 + 71 157374908 - Ssed_1769 - hypothetical protein 1768 42.06 -1 2126997..2128337 - 446 157374909 - Ssed_1770 - guanosine polyphosphate pyrophosphohydrolase/synthetase 1769 38.89 -2 2128641..2130188 - 515 157374910 - Ssed_1771 - phospholipase D/transphosphatidylase 1770 43.69 0 2130572..2131054 - 160 157374911 - Ssed_1772 - MarR family transcriptional regulator 1771 40.97 -1 2131299..2132516 - 405 157374912 - Ssed_1773 - putative transporter, BCCT family protein 1772 44.12 0 2133324..2135177 + 617 157374913 - Ssed_1774 - carnitine O-acetyltransferase 1773 48.61 0 2135442..2135801 + 119 157374914 - Ssed_1775 - hypothetical protein 1774 44.72 0 2135947..2136798 - 283 157374915 - Ssed_1776 - LysR family transcriptional regulator 1775 48.82 0 2136931..2137905 + 324 157374916 - Ssed_1777 - alpha/beta hydrolase fold 1776 48.28 0 2137935..2138543 + 202 157374917 - Ssed_1778 - short chain dehydrogenase 1777 50.77 +1 2138615..2139853 - 412 157374918 - Ssed_1779 - hypothetical protein 1778 43.92 0 2140151..2141728 + 525 157374919 - Ssed_1780 - response regulator receiver modulated metal dependent phosphohydrolase 1779 42.42 -1 2141738..2143102 + 454 157374920 - Ssed_1781 - signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein 1780 47.76 0 2143107..2144492 - 461 157374921 - Ssed_1782 - peptidase M24 1781 46.56 0 2144719..2145270 + 183 157374922 - Ssed_1783 - D,D-heptose 1,7-bisphosphate phosphatase 1782 43.68 0 2152549..2153244 - 231 157374923 - Ssed_1784 - hypothetical protein 1783 39.88 -1 2153542..2153877 + 111 157374924 - Ssed_1785 - hypothetical protein 1784 41.14 -1 2154002..2154949 + 315 157374925 - Ssed_1786 - magnesium and cobalt transport protein CorA 1785 37.14 -2 2154944..2155258 - 104 157374926 - Ssed_1787 - hypothetical protein 1786 42.50 -1 2155417..2156682 - 421 157374927 - Ssed_1788 - metal dependent phosphohydrolase 1787 44.49 0 2156838..2157545 + 235 157374928 - Ssed_1789 - hypothetical protein 1788 45.65 0 2157640..2158995 - 451 157374929 - Ssed_1790 - integral membrane sensor signal transduction histidine kinase 1789 46.67 0 2159056..2159730 - 224 157374930 - Ssed_1791 - two component transcriptional regulator 1790 44.56 0 2160005..2160859 + 284 157374931 - Ssed_1792 - phosphonate ABC transporter, periplasmic phosphonate-binding protein 1791 44.54 0 2160876..2161571 + 231 157374932 - Ssed_1793 - putative phosphonate ABC transporter, ATP-binding protein 1792 47.36 0 2161564..2163096 + 510 157374933 - Ssed_1794 - binding-protein-dependent transport systems inner membrane component 1793 47.54 0 2163300..2163644 - 114 157374934 - Ssed_1795 - hypothetical protein 1794 45.29 0 2163726..2164553 - 275 157374935 - Ssed_1796 - hypothetical protein 1795 46.77 0 2164932..2166524 + 530 157374936 - Ssed_1797 - integral membrane sensor signal transduction histidine kinase 1796 50.70 +1 2166521..2167873 + 450 157374937 - Ssed_1798 - two component, sigma54 specific, Fis family transcriptional regulator 1797 43.63 0 2168088..2169320 + 410 157374938 - Ssed_1799 - metal dependent phosphohydrolase domain-containing protein 1798 45.85 0 2169366..2170004 - 212 157374939 - Ssed_1800 - threonine efflux protein, putative 1799 43.61 0 2170111..2170947 - 278 157374940 - Ssed_1801 - AraC family transcriptional regulator 1800 47.41 0 2171109..2171939 + 276 157374941 - Ssed_1802 - NAD synthetase 1801 45.62 0 2171985..2172464 - 159 157374942 - Ssed_1803 - hypothetical protein 1802 45.58 0 2172578..2174047 + 489 157374943 - Ssed_1804 - hypothetical protein 1803 45.32 0 2174053..2176230 - 725 157374944 - Ssed_1805 - diguanylate cyclase 1804 46.18 0 2176512..2177087 - 191 157374945 - Ssed_1806 - elongation factor P 1805 46.12 0 2177214..2178809 - 531 157374946 - Ssed_1807 - putative ATP-binding component of ABC transporter 1806 46.05 0 2179647..2181431 - 594 157374947 - Ssed_1808 - sulfatase 1807 46.76 0 2181518..2181733 - 71 157374948 - Ssed_1809 - hypothetical protein 1808 45.83 0 2182101..2183132 + 343 157374949 - Ssed_1810 - nucleoid-associated protein NdpA 1809 46.60 0 2183497..2184378 + 293 157374950 - Ssed_1811 - hypothetical protein 1810 50.65 +1 2184417..2185265 + 282 157374951 - Ssed_1812 - peptidase M23B 1811 47.78 0 2185390..2186199 - 269 157374952 - Ssed_1813 - phytochelatin synthase-like protein 1812 48.94 0 2186356..2188437 + 693 157374953 - Ssed_1814 - putative putative ferrichrome-iron receptor 1813 38.20 -2 2190542..2190952 + 136 157374954 - Ssed_1815 - hypothetical protein 1814 48.63 0 2191396..2192310 - 304 157374955 - Ssed_1816 - GCN5-related N-acetyltransferase 1815 52.92 +1 2192297..2193751 - 484 157374956 - Ssed_1817 - SSS family solute/sodium (Na+) symporter 1816 49.25 0 2193754..2194947 - 397 157374957 - Ssed_1818 - lysine 2,3-aminomutase 1817 46.25 0 2195595..2196167 - 190 157374958 - Ssed_1819 - hypothetical protein 1818 49.63 0 2196220..2196759 - 179 157374959 - Ssed_1820 - ErfK/YbiS/YcfS/YnhG family protein 1819 43.93 0 2196931..2197770 + 279 157374960 - Ssed_1821 - ion transport protein 1820 48.62 0 2198117..2199634 + 505 157374961 - Ssed_1822 - MATE efflux family protein 1821 46.41 0 2199717..2199953 - 78 157374962 - Ssed_1823 - hypothetical protein 1822 40.57 -1 2200129..2200446 + 105 157374963 - Ssed_1824 - hypothetical protein 1823 45.39 0 2200789..2201244 - 151 157374964 - Ssed_1825 - putative lipoprotein 1824 47.62 0 2201603..2202337 + 244 157374965 - Ssed_1826 - hypothetical protein 1825 47.33 0 2202343..2203128 + 261 157374966 - Ssed_1827 - hypothetical protein 1826 44.44 0 2203118..2203468 + 116 157374967 - Ssed_1828 - putative nitrogen regulatory protein P-II 1827 45.34 0 2203465..2203872 + 135 157374968 - Ssed_1829 - signal transduction protein 1828 43.14 0 2203936..2204292 - 118 157374969 - Ssed_1830 - glutaredoxin 1829 46.58 0 2204358..2207399 - 1013 157374970 - Ssed_1831 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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