version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1693 43.79 0 2031573..2032691 - 372 157374834 - Ssed_1695 - hypothetical protein 1694 45.73 0 2032795..2033391 - 198 157374835 - Ssed_1696 - arylesterase 1695 47.54 0 2033408..2034160 + 250 157374836 - Ssed_1697 - ABC transporter related 1696 48.83 0 2034160..2036631 + 823 157374837 - Ssed_1698 - hypothetical protein 1697 48.81 0 2036708..2037631 - 307 157374838 - Ssed_1699 - hypothetical protein 1698 46.02 0 2037876..2038955 + 359 157374839 - Ssed_1700 - hypothetical protein 1699 47.96 0 2038999..2039907 + 302 157374840 - Ssed_1701 - hypothetical protein 1700 40.89 -1 2040060..2040284 - 74 157374841 - Ssed_1702 - hypothetical protein 1701 42.82 -1 2040858..2041289 - 143 157374842 - Ssed_1703 - hypothetical protein 1702 48.51 0 2041698..2043839 - 713 157374843 - Ssed_1704 - phosphate acetyltransferase 1703 45.75 0 2043928..2045127 - 399 157374844 - Ssed_1705 - acetate kinase 1704 46.85 0 2045322..2045765 + 147 157374845 - Ssed_1706 - hypothetical protein 1705 43.59 0 2045811..2046551 - 246 157374846 - Ssed_1707 - pyruvate formate lyase-activating enzyme 1 1706 46.69 0 2046645..2048927 - 760 157374847 - Ssed_1708 - formate C-acetyltransferase 1707 47.95 0 2049531..2051063 - 510 157374848 - Ssed_1709 - hypothetical protein 1708 47.02 0 2051994..2053469 + 491 157374849 - Ssed_1710 - formate/nitrite transporter 1709 54.17 +2 2053538..2053657 - 39 157374850 - Ssed_1711 - LysR family transcriptional regulator 1710 47.37 0 2053749..2054660 - 303 157374851 - Ssed_1712 - LysR family transcriptional regulator 1711 46.35 0 2055029..2055220 + 63 157374852 - Ssed_1713 - hypothetical protein 1712 48.55 0 2055213..2056664 + 483 157374853 - Ssed_1714 - sodium/panthothenate symporter 1713 50.65 +1 2056843..2058384 + 513 157374854 - Ssed_1715 - hypothetical protein 1714 45.67 0 2059048..2061729 - 893 157374855 - Ssed_1716 - TonB-dependent receptor, plug 1715 46.85 0 2062303..2063271 - 322 157374856 - Ssed_1717 - C4-dicarboxylate transporter/malic acid transport protein 1716 44.97 0 2063388..2064461 - 357 157374857 - Ssed_1718 - O-methyltransferase, putative 1717 45.14 0 2064883..2065314 - 143 157374858 - Ssed_1719 - CBS domain-containing protein 1718 43.99 0 2065598..2066263 + 221 157374859 - Ssed_1720 - TetR family transcriptional regulator 1719 48.40 0 2066659..2067627 - 322 157374860 - Ssed_1721 - cysteine synthase A 1720 47.61 0 2067922..2069133 + 403 157374861 - Ssed_1722 - RDD domain-containing protein 1721 45.45 0 2069434..2070696 + 420 157374862 - Ssed_1723 - diguanylate cyclase 1722 42.84 -1 2070700..2071614 - 304 157374863 - Ssed_1724 - transcriptional regulator 1723 41.85 -1 2071652..2071921 + 89 157374864 - Ssed_1725 - hypothetical protein 1724 47.13 0 2071921..2072268 + 115 157374865 - Ssed_1726 - hypothetical protein 1725 49.28 0 2072782..2073678 + 298 157374866 - Ssed_1727 - putative transcriptional activator 1726 48.56 0 2073730..2074734 - 334 157374867 - Ssed_1728 - hypothetical protein 1727 51.52 +1 2075216..2076634 + 472 157374868 - Ssed_1729 - tetrachloroethene dehalogenase 1728 53.26 +1 2076650..2076925 + 91 157374869 - Ssed_1730 - hypothetical protein 1729 50.07 0 2077026..2077748 + 240 157374870 - Ssed_1731 - hypothetical protein 1730 51.16 +1 2077861..2080233 - 790 157374871 - Ssed_1732 - hypothetical protein 1731 40.66 -1 2081041..2081436 + 131 157374872 - Ssed_1733 - hypothetical protein 1732 51.55 +1 2082121..2082894 - 257 157374873 - Ssed_1734 - putative sulfate transport protein CysZ 1733 51.67 +1 2083099..2083998 + 299 157374874 - Ssed_1735 - chromosome segregation protein SMC 1734 49.04 0 2084070..2086514 + 814 157374875 - Ssed_1736 - chromosome segregation protein SMC 1735 47.86 0 2086538..2087563 + 341 157374876 - Ssed_1737 - cell division protein ZipA 1736 52.26 +1 2087653..2089665 + 670 157374877 - Ssed_1738 - DNA ligase (NAD(+)) 1737 47.33 0 2089796..2090281 + 161 157374878 - Ssed_1739 - hypothetical protein 1738 47.43 0 2090939..2092144 + 401 157374879 - Ssed_1740 - metal dependent phosphohydrolase 1739 49.36 0 2092221..2093081 + 286 157374880 - Ssed_1741 - NAD-dependent epimerase/dehydratase 1740 48.66 0 2093116..2093748 + 210 157374881 - Ssed_1742 - DsbA oxidoreductase 1741 47.32 0 2094053..2094481 + 142 157374882 - Ssed_1743 - prophage MuSo1, positive regulator of late transcription, putative 1742 51.11 +1 2094866..2095000 + 44 157374883 - Ssed_1744 - prophage MuSo1, protein Gp32, putative 1743 41.95 -1 2095315..2095581 + 88 157374884 - Ssed_1745 - hypothetical protein 1744 48.34 0 2095609..2097327 + 572 157374885 - Ssed_1746 - Na+/solute symporter 1745 50.73 +1 2097541..2100960 + 1139 157374886 - Ssed_1747 - hypothetical protein 1746 48.91 0 2100963..2101790 + 275 157374887 - Ssed_1748 - hypothetical protein 1747 47.91 0 2101889..2102437 + 182 157374888 - Ssed_1749 - CDP-alcohol phosphatidyltransferase 1748 41.05 -1 2102482..2103012 + 176 157374889 - Ssed_1750 - hypothetical protein 1749 50.16 0 2103179..2105026 + 615 157374890 - Ssed_1751 - cyclic nucleotide-binding protein 1750 49.05 0 2105027..2105713 + 228 157374891 - Ssed_1752 - exonuclease, RNase T and DNA polymerase III 1751 46.63 0 2105705..2107456 - 583 157374892 - Ssed_1753 - sensor protein LuxQ 1752 43.82 0 2107524..2108057 - 177 157374893 - Ssed_1754 - hypothetical protein 1753 50.95 +1 2108253..2108831 + 192 157374894 - Ssed_1755 - hypothetical protein 1754 50.87 +1 2109325..2110869 + 514 157374895 - Ssed_1756 - NAD(P) transhydrogenase subunit alpha 1755 49.04 0 2110884..2112284 + 466 157374896 - Ssed_1757 - NAD(P)(+) transhydrogenase (AB-specific) 1756 49.95 0 2112880..2113944 - 354 157374897 - Ssed_1758 - 3-oxoacyl-(acyl carrier protein) synthase III 1757 46.28 0 2114040..2114711 - 223 157374898 - Ssed_1759 - GntR family transcriptional regulator 1758 56.83 +2 2114840..2116405 - 521 157374899 - Ssed_1760 - aldehyde dehydrogenase 1759 51.20 +1 2116462..2117463 - 333 157374900 - Ssed_1761 - proline racemase 1760 48.09 0 2117629..2118543 - 304 157374901 - Ssed_1762 - dihydrodipicolinate synthase 1761 53.03 +1 2118735..2119775 + 346 157374902 - Ssed_1763 - proline racemase 1762 52.09 +1 2119955..2121223 + 422 157374903 - Ssed_1764 - D-amino-acid dehydrogenase 1763 37.08 -2 2121662..2122435 + 257 157374904 - Ssed_1765 - methyltransferase type 11 1764 44.05 0 2122993..2123328 + 111 157374905 - Ssed_1766 - hypothetical protein 1765 38.12 -2 2123590..2124633 - 347 157374906 - Ssed_1767 - hypothetical protein 1766 45.32 0 2124946..2125896 + 316 157374907 - Ssed_1768 - meta-pathway phenol degradation-like protein 1767 34.26 -2 2126621..2126836 + 71 157374908 - Ssed_1769 - hypothetical protein 1768 42.06 -1 2126997..2128337 - 446 157374909 - Ssed_1770 - guanosine polyphosphate pyrophosphohydrolase/synthetase 1769 38.89 -2 2128641..2130188 - 515 157374910 - Ssed_1771 - phospholipase D/transphosphatidylase 1770 43.69 0 2130572..2131054 - 160 157374911 - Ssed_1772 - MarR family transcriptional regulator 1771 40.97 -1 2131299..2132516 - 405 157374912 - Ssed_1773 - putative transporter, BCCT family protein 1772 44.12 0 2133324..2135177 + 617 157374913 - Ssed_1774 - carnitine O-acetyltransferase 1773 48.61 0 2135442..2135801 + 119 157374914 - Ssed_1775 - hypothetical protein 1774 44.72 0 2135947..2136798 - 283 157374915 - Ssed_1776 - LysR family transcriptional regulator 1775 48.82 0 2136931..2137905 + 324 157374916 - Ssed_1777 - alpha/beta hydrolase fold 1776 48.28 0 2137935..2138543 + 202 157374917 - Ssed_1778 - short chain dehydrogenase 1777 50.77 +1 2138615..2139853 - 412 157374918 - Ssed_1779 - hypothetical protein 1778 43.92 0 2140151..2141728 + 525 157374919 - Ssed_1780 - response regulator receiver modulated metal dependent phosphohydrolase 1779 42.42 -1 2141738..2143102 + 454 157374920 - Ssed_1781 - signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein 1780 47.76 0 2143107..2144492 - 461 157374921 - Ssed_1782 - peptidase M24 1781 46.56 0 2144719..2145270 + 183 157374922 - Ssed_1783 - D,D-heptose 1,7-bisphosphate phosphatase 1782 43.68 0 2152549..2153244 - 231 157374923 - Ssed_1784 - hypothetical protein 1783 39.88 -1 2153542..2153877 + 111 157374924 - Ssed_1785 - hypothetical protein 1784 41.14 -1 2154002..2154949 + 315 157374925 - Ssed_1786 - magnesium and cobalt transport protein CorA 1785 37.14 -2 2154944..2155258 - 104 157374926 - Ssed_1787 - hypothetical protein 1786 42.50 -1 2155417..2156682 - 421 157374927 - Ssed_1788 - metal dependent phosphohydrolase 1787 44.49 0 2156838..2157545 + 235 157374928 - Ssed_1789 - hypothetical protein 1788 45.65 0 2157640..2158995 - 451 157374929 - Ssed_1790 - integral membrane sensor signal transduction histidine kinase 1789 46.67 0 2159056..2159730 - 224 157374930 - Ssed_1791 - two component transcriptional regulator 1790 44.56 0 2160005..2160859 + 284 157374931 - Ssed_1792 - phosphonate ABC transporter, periplasmic phosphonate-binding protein 1791 44.54 0 2160876..2161571 + 231 157374932 - Ssed_1793 - putative phosphonate ABC transporter, ATP-binding protein 1792 47.36 0 2161564..2163096 + 510 157374933 - Ssed_1794 - binding-protein-dependent transport systems inner membrane component 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0