version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1657 46.27 0 1986886..1987086 - 66 157374798 - Ssed_1659 - hypothetical protein 1658 46.60 0 1987629..1988495 + 288 157374799 - Ssed_1660 - hypothetical protein 1659 51.40 +1 1989276..1990565 - 429 157374800 - Ssed_1661 - alpha/beta hydrolase fold 1660 48.51 0 1990806..1991477 + 223 157374801 - Ssed_1662 - beta-lactamase domain-containing protein 1661 46.39 0 1991813..1992325 + 170 157374802 - Ssed_1663 - hypothetical protein 1662 47.48 0 1992640..1994088 + 482 157374803 - Ssed_1664 - methyl-accepting chemotaxis sensory transducer 1663 50.87 +1 1994466..1996484 - 672 157374804 - Ssed_1665 - NADH:flavin oxidoreductase/NADH oxidase 1664 48.66 0 1996593..1997675 + 360 157374805 - Ssed_1666 - helix-turn-helix-domain-containing protein 1665 48.66 0 1997705..1999426 - 573 157374806 - Ssed_1667 - long-chain-fatty-acid--CoA ligase 1666 50.56 +1 1999811..2000617 - 268 157374807 - Ssed_1668 - exonuclease III 1667 48.67 0 2000654..2000953 - 99 157374808 - Ssed_1669 - YciI-like protein 1668 41.67 -1 2001014..2001565 - 183 157374809 - Ssed_1670 - intracellular septation protein A 1669 47.76 0 2001694..2003211 - 505 157374810 - Ssed_1671 - type II secretory pathway ATPase ExeA 1670 48.12 0 2003566..2005641 - 691 157374811 - Ssed_1672 - hypothetical protein 1671 45.94 0 2005868..2007787 - 639 157374812 - Ssed_1673 - receptor, putative 1672 46.23 0 2008015..2008425 - 136 157374813 - Ssed_1674 - nickel-responsive regulator 1673 46.20 0 2008622..2010160 + 512 157374814 - Ssed_1675 - oligopeptide-binding protein OppA 1674 47.83 0 2010151..2011143 + 330 157374815 - Ssed_1676 - ABC-type dipeptide/oligopeptide/nickel transporter, permease component 1675 50.90 +1 2011140..2011970 + 276 157374816 - Ssed_1677 - oligopeptide transport system permease protein OppC 1676 52.26 +1 2011945..2012673 + 242 157374817 - Ssed_1678 - oligopeptide transport ATP-binding protein OppD 1677 49.07 0 2012657..2013247 + 196 157374818 - Ssed_1679 - putative dipeptide ABC transporter 1678 44.11 0 2013538..2014743 + 401 157374819 - Ssed_1680 - metal dependent phosphohydrolase 1679 52.26 +1 2014834..2015652 - 272 157374820 - Ssed_1681 - tryptophan synthase subunit alpha 1680 52.61 +1 2015639..2016862 - 407 157374821 - Ssed_1682 - tryptophan synthase subunit beta 1681 51.53 +1 2017013..2018446 - 477 157374822 - Ssed_1683 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1682 55.81 +2 2018449..2019507 - 352 157374823 - Ssed_1684 - anthranilate phosphoribosyltransferase 1683 51.82 +1 2019504..2020109 - 201 157374824 - Ssed_1685 - anthranilate synthase component II 1684 49.68 0 2020106..2021665 - 519 157374825 - Ssed_1686 - anthranilate synthase component I 1685 46.74 0 2022218..2023075 + 285 157374826 - Ssed_1687 - phosphotransferase domain-containing protein 1686 46.38 0 2023278..2023898 + 206 157374827 - Ssed_1688 - SUA5/YciO/YrdC/YwlC family protein 1687 46.51 0 2024010..2024798 + 262 157374828 - Ssed_1689 - chromosome segregation and condensation protein ScpA 1688 43.72 0 2024799..2025443 + 214 157374829 - Ssed_1690 - putative transcriptional regulator 1689 48.10 0 2025436..2026302 + 288 157374830 - Ssed_1691 - pseudouridine synthase 1690 50.27 0 2026550..2027287 - 245 157374831 - Ssed_1692 - short chain dehydrogenase 1691 51.83 +1 2027549..2030035 + 828 157374832 - Ssed_1693 - hypothetical protein 1692 45.83 0 2030438..2031469 + 343 157374833 - Ssed_1694 - putative periplasmic protease 1693 43.79 0 2031573..2032691 - 372 157374834 - Ssed_1695 - hypothetical protein 1694 45.73 0 2032795..2033391 - 198 157374835 - Ssed_1696 - arylesterase 1695 47.54 0 2033408..2034160 + 250 157374836 - Ssed_1697 - ABC transporter related 1696 48.83 0 2034160..2036631 + 823 157374837 - Ssed_1698 - hypothetical protein 1697 48.81 0 2036708..2037631 - 307 157374838 - Ssed_1699 - hypothetical protein 1698 46.02 0 2037876..2038955 + 359 157374839 - Ssed_1700 - hypothetical protein 1699 47.96 0 2038999..2039907 + 302 157374840 - Ssed_1701 - hypothetical protein 1700 40.89 -1 2040060..2040284 - 74 157374841 - Ssed_1702 - hypothetical protein 1701 42.82 -1 2040858..2041289 - 143 157374842 - Ssed_1703 - hypothetical protein 1702 48.51 0 2041698..2043839 - 713 157374843 - Ssed_1704 - phosphate acetyltransferase 1703 45.75 0 2043928..2045127 - 399 157374844 - Ssed_1705 - acetate kinase 1704 46.85 0 2045322..2045765 + 147 157374845 - Ssed_1706 - hypothetical protein 1705 43.59 0 2045811..2046551 - 246 157374846 - Ssed_1707 - pyruvate formate lyase-activating enzyme 1 1706 46.69 0 2046645..2048927 - 760 157374847 - Ssed_1708 - formate C-acetyltransferase 1707 47.95 0 2049531..2051063 - 510 157374848 - Ssed_1709 - hypothetical protein 1708 47.02 0 2051994..2053469 + 491 157374849 - Ssed_1710 - formate/nitrite transporter 1709 54.17 +2 2053538..2053657 - 39 157374850 - Ssed_1711 - LysR family transcriptional regulator 1710 47.37 0 2053749..2054660 - 303 157374851 - Ssed_1712 - LysR family transcriptional regulator 1711 46.35 0 2055029..2055220 + 63 157374852 - Ssed_1713 - hypothetical protein 1712 48.55 0 2055213..2056664 + 483 157374853 - Ssed_1714 - sodium/panthothenate symporter 1713 50.65 +1 2056843..2058384 + 513 157374854 - Ssed_1715 - hypothetical protein 1714 45.67 0 2059048..2061729 - 893 157374855 - Ssed_1716 - TonB-dependent receptor, plug 1715 46.85 0 2062303..2063271 - 322 157374856 - Ssed_1717 - C4-dicarboxylate transporter/malic acid transport protein 1716 44.97 0 2063388..2064461 - 357 157374857 - Ssed_1718 - O-methyltransferase, putative 1717 45.14 0 2064883..2065314 - 143 157374858 - Ssed_1719 - CBS domain-containing protein 1718 43.99 0 2065598..2066263 + 221 157374859 - Ssed_1720 - TetR family transcriptional regulator 1719 48.40 0 2066659..2067627 - 322 157374860 - Ssed_1721 - cysteine synthase A 1720 47.61 0 2067922..2069133 + 403 157374861 - Ssed_1722 - RDD domain-containing protein 1721 45.45 0 2069434..2070696 + 420 157374862 - Ssed_1723 - diguanylate cyclase 1722 42.84 -1 2070700..2071614 - 304 157374863 - Ssed_1724 - transcriptional regulator 1723 41.85 -1 2071652..2071921 + 89 157374864 - Ssed_1725 - hypothetical protein 1724 47.13 0 2071921..2072268 + 115 157374865 - Ssed_1726 - hypothetical protein 1725 49.28 0 2072782..2073678 + 298 157374866 - Ssed_1727 - putative transcriptional activator 1726 48.56 0 2073730..2074734 - 334 157374867 - Ssed_1728 - hypothetical protein 1727 51.52 +1 2075216..2076634 + 472 157374868 - Ssed_1729 - tetrachloroethene dehalogenase 1728 53.26 +1 2076650..2076925 + 91 157374869 - Ssed_1730 - hypothetical protein 1729 50.07 0 2077026..2077748 + 240 157374870 - Ssed_1731 - hypothetical protein 1730 51.16 +1 2077861..2080233 - 790 157374871 - Ssed_1732 - hypothetical protein 1731 40.66 -1 2081041..2081436 + 131 157374872 - Ssed_1733 - hypothetical protein 1732 51.55 +1 2082121..2082894 - 257 157374873 - Ssed_1734 - putative sulfate transport protein CysZ 1733 51.67 +1 2083099..2083998 + 299 157374874 - Ssed_1735 - chromosome segregation protein SMC 1734 49.04 0 2084070..2086514 + 814 157374875 - Ssed_1736 - chromosome segregation protein SMC 1735 47.86 0 2086538..2087563 + 341 157374876 - Ssed_1737 - cell division protein ZipA 1736 52.26 +1 2087653..2089665 + 670 157374877 - Ssed_1738 - DNA ligase (NAD(+)) 1737 47.33 0 2089796..2090281 + 161 157374878 - Ssed_1739 - hypothetical protein 1738 47.43 0 2090939..2092144 + 401 157374879 - Ssed_1740 - metal dependent phosphohydrolase 1739 49.36 0 2092221..2093081 + 286 157374880 - Ssed_1741 - NAD-dependent epimerase/dehydratase 1740 48.66 0 2093116..2093748 + 210 157374881 - Ssed_1742 - DsbA oxidoreductase 1741 47.32 0 2094053..2094481 + 142 157374882 - Ssed_1743 - prophage MuSo1, positive regulator of late transcription, putative 1742 51.11 +1 2094866..2095000 + 44 157374883 - Ssed_1744 - prophage MuSo1, protein Gp32, putative 1743 41.95 -1 2095315..2095581 + 88 157374884 - Ssed_1745 - hypothetical protein 1744 48.34 0 2095609..2097327 + 572 157374885 - Ssed_1746 - Na+/solute symporter 1745 50.73 +1 2097541..2100960 + 1139 157374886 - Ssed_1747 - hypothetical protein 1746 48.91 0 2100963..2101790 + 275 157374887 - Ssed_1748 - hypothetical protein 1747 47.91 0 2101889..2102437 + 182 157374888 - Ssed_1749 - CDP-alcohol phosphatidyltransferase 1748 41.05 -1 2102482..2103012 + 176 157374889 - Ssed_1750 - hypothetical protein 1749 50.16 0 2103179..2105026 + 615 157374890 - Ssed_1751 - cyclic nucleotide-binding protein 1750 49.05 0 2105027..2105713 + 228 157374891 - Ssed_1752 - exonuclease, RNase T and DNA polymerase III 1751 46.63 0 2105705..2107456 - 583 157374892 - Ssed_1753 - sensor protein LuxQ 1752 43.82 0 2107524..2108057 - 177 157374893 - Ssed_1754 - hypothetical protein 1753 50.95 +1 2108253..2108831 + 192 157374894 - Ssed_1755 - hypothetical protein 1754 50.87 +1 2109325..2110869 + 514 157374895 - Ssed_1756 - NAD(P) transhydrogenase subunit alpha 1755 49.04 0 2110884..2112284 + 466 157374896 - Ssed_1757 - NAD(P)(+) transhydrogenase (AB-specific) 1756 49.95 0 2112880..2113944 - 354 157374897 - Ssed_1758 - 3-oxoacyl-(acyl carrier protein) synthase III 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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