version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1610 46.37 0 1923994..1924392 - 132 157374751 - Ssed_1612 - rhodanese domain-containing protein 1611 39.73 -1 1924502..1924720 - 72 157374752 - Ssed_1613 - hypothetical protein 1612 48.33 0 1924798..1928097 - 1099 157374753 - Ssed_1614 - acriflavin resistance protein 1613 48.85 0 1928108..1929151 - 347 157374754 - Ssed_1615 - RND family efflux transporter MFP subunit 1614 44.63 0 1929311..1930027 - 238 157374755 - Ssed_1616 - hypothetical protein 1615 46.61 0 1930111..1930494 - 127 157374756 - Ssed_1617 - hypothetical protein 1616 44.37 0 1930627..1931949 - 440 157374757 - Ssed_1618 - membrane protein involved in aromatic hydrocarbon degradation 1617 47.52 0 1932317..1933768 - 483 157374758 - Ssed_1619 - sodium/proline symporter 1618 46.24 0 1933919..1934623 - 234 157374759 - Ssed_1620 - hypothetical protein 1619 42.91 -1 1934616..1935179 - 187 157374760 - Ssed_1621 - RNA polymerase sigma factor 1620 47.77 0 1935287..1936921 - 544 157374761 - Ssed_1622 - hypothetical protein 1621 49.41 0 1937004..1938938 - 644 157374762 - Ssed_1623 - TPR repeat-containing protein 1622 49.75 0 1938941..1939933 - 330 157374763 - Ssed_1624 - von Willebrand factor, type A 1623 47.87 0 1939927..1940442 - 171 157374764 - Ssed_1625 - hypothetical protein 1624 47.63 0 1940442..1941371 - 309 157374765 - Ssed_1626 - hypothetical protein 1625 49.53 0 1941372..1942328 - 318 157374766 - Ssed_1627 - ATPase 1626 49.43 0 1942774..1944084 + 436 157374767 - Ssed_1628 - 3-ketoacyl-CoA thiolase 1627 47.91 0 1944090..1946237 + 715 157374768 - Ssed_1629 - multifunctional fatty acid oxidation complex subunit alpha 1628 46.22 0 1946507..1946731 + 74 157374769 - Ssed_1630 - hypothetical protein 1629 41.67 -1 1946865..1946984 - 39 157374770 - Ssed_1631 - hypothetical protein 1630 46.37 0 1947003..1947608 - 201 157374771 - Ssed_1632 - hypothetical protein 1631 39.53 -1 1947752..1952095 - 1447 157374772 - Ssed_1633 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 1632 45.34 0 1952522..1955311 - 929 157374773 - Ssed_1634 - peptidase M16 domain-containing protein 1633 48.67 0 1955580..1956068 + 162 157374774 - Ssed_1635 - phosphohistidine phosphatase, SixA 1634 46.89 0 1956330..1956860 - 176 157374775 - Ssed_1636 - hypothetical protein 1635 45.40 0 1957036..1957980 + 314 157374776 - Ssed_1637 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1636 51.23 +1 1958129..1959223 + 364 157374777 - Ssed_1638 - chorismate synthase 1637 49.05 0 1959434..1960591 + 385 157374778 - Ssed_1639 - major facilitator transporter 1638 50.84 +1 1960677..1961801 + 374 157374779 - Ssed_1640 - hypothetical protein 1639 44.81 0 1961866..1962135 + 89 157374780 - Ssed_1641 - hypothetical protein 1640 49.63 0 1962152..1962685 + 177 157374781 - Ssed_1642 - tRNA/rRNA methyltransferase (SpoU) 1641 49.28 0 1962782..1964920 - 712 157374782 - Ssed_1643 - FAD dependent oxidoreductase 1642 49.92 0 1965031..1966242 + 403 157374783 - Ssed_1644 - beta-ketoacyl synthase 1643 41.55 -1 1966518..1967552 - 344 157374784 - Ssed_1645 - hypothetical protein 1644 40.55 -1 1967540..1968121 - 193 157374785 - Ssed_1646 - protein-glutamate methylesterase 1645 39.76 -1 1968125..1968964 - 279 157374786 - Ssed_1647 - protein-glutamate O-methyltransferase 1646 41.58 -1 1968966..1973090 - 1374 157374787 - Ssed_1648 - histidine kinase 1647 49.05 0 1973396..1974559 + 387 157374788 - Ssed_1649 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region 1648 46.71 0 1974562..1975578 + 338 157374789 - Ssed_1650 - aspartate-semialdehyde dehydrogenase 1649 50.49 +1 1975792..1978629 + 945 157374790 - Ssed_1651 - hypothetical protein 1650 48.35 0 1978822..1979607 + 261 157374791 - Ssed_1652 - tRNA-pseudouridine synthase I 1651 48.97 0 1979683..1980948 + 421 157374792 - Ssed_1653 - dihydrofolate synthase 1652 45.57 0 1981086..1981706 + 206 157374793 - Ssed_1654 - sporulation domain-containing protein 1653 45.60 0 1981820..1982308 + 162 157374794 - Ssed_1655 - colicin V production protein 1654 47.46 0 1982410..1983924 + 504 157374795 - Ssed_1656 - amidophosphoribosyltransferase 1655 44.86 0 1984188..1984664 + 158 157374796 - Ssed_1657 - hypothetical protein 1656 50.93 +1 1984830..1986869 + 679 157374797 - Ssed_1658 - DNA topoisomerase III 1657 46.27 0 1986886..1987086 - 66 157374798 - Ssed_1659 - hypothetical protein 1658 46.60 0 1987629..1988495 + 288 157374799 - Ssed_1660 - hypothetical protein 1659 51.40 +1 1989276..1990565 - 429 157374800 - Ssed_1661 - alpha/beta hydrolase fold 1660 48.51 0 1990806..1991477 + 223 157374801 - Ssed_1662 - beta-lactamase domain-containing protein 1661 46.39 0 1991813..1992325 + 170 157374802 - Ssed_1663 - hypothetical protein 1662 47.48 0 1992640..1994088 + 482 157374803 - Ssed_1664 - methyl-accepting chemotaxis sensory transducer 1663 50.87 +1 1994466..1996484 - 672 157374804 - Ssed_1665 - NADH:flavin oxidoreductase/NADH oxidase 1664 48.66 0 1996593..1997675 + 360 157374805 - Ssed_1666 - helix-turn-helix-domain-containing protein 1665 48.66 0 1997705..1999426 - 573 157374806 - Ssed_1667 - long-chain-fatty-acid--CoA ligase 1666 50.56 +1 1999811..2000617 - 268 157374807 - Ssed_1668 - exonuclease III 1667 48.67 0 2000654..2000953 - 99 157374808 - Ssed_1669 - YciI-like protein 1668 41.67 -1 2001014..2001565 - 183 157374809 - Ssed_1670 - intracellular septation protein A 1669 47.76 0 2001694..2003211 - 505 157374810 - Ssed_1671 - type II secretory pathway ATPase ExeA 1670 48.12 0 2003566..2005641 - 691 157374811 - Ssed_1672 - hypothetical protein 1671 45.94 0 2005868..2007787 - 639 157374812 - Ssed_1673 - receptor, putative 1672 46.23 0 2008015..2008425 - 136 157374813 - Ssed_1674 - nickel-responsive regulator 1673 46.20 0 2008622..2010160 + 512 157374814 - Ssed_1675 - oligopeptide-binding protein OppA 1674 47.83 0 2010151..2011143 + 330 157374815 - Ssed_1676 - ABC-type dipeptide/oligopeptide/nickel transporter, permease component 1675 50.90 +1 2011140..2011970 + 276 157374816 - Ssed_1677 - oligopeptide transport system permease protein OppC 1676 52.26 +1 2011945..2012673 + 242 157374817 - Ssed_1678 - oligopeptide transport ATP-binding protein OppD 1677 49.07 0 2012657..2013247 + 196 157374818 - Ssed_1679 - putative dipeptide ABC transporter 1678 44.11 0 2013538..2014743 + 401 157374819 - Ssed_1680 - metal dependent phosphohydrolase 1679 52.26 +1 2014834..2015652 - 272 157374820 - Ssed_1681 - tryptophan synthase subunit alpha 1680 52.61 +1 2015639..2016862 - 407 157374821 - Ssed_1682 - tryptophan synthase subunit beta 1681 51.53 +1 2017013..2018446 - 477 157374822 - Ssed_1683 - bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1682 55.81 +2 2018449..2019507 - 352 157374823 - Ssed_1684 - anthranilate phosphoribosyltransferase 1683 51.82 +1 2019504..2020109 - 201 157374824 - Ssed_1685 - anthranilate synthase component II 1684 49.68 0 2020106..2021665 - 519 157374825 - Ssed_1686 - anthranilate synthase component I 1685 46.74 0 2022218..2023075 + 285 157374826 - Ssed_1687 - phosphotransferase domain-containing protein 1686 46.38 0 2023278..2023898 + 206 157374827 - Ssed_1688 - SUA5/YciO/YrdC/YwlC family protein 1687 46.51 0 2024010..2024798 + 262 157374828 - Ssed_1689 - chromosome segregation and condensation protein ScpA 1688 43.72 0 2024799..2025443 + 214 157374829 - Ssed_1690 - putative transcriptional regulator 1689 48.10 0 2025436..2026302 + 288 157374830 - Ssed_1691 - pseudouridine synthase 1690 50.27 0 2026550..2027287 - 245 157374831 - Ssed_1692 - short chain dehydrogenase 1691 51.83 +1 2027549..2030035 + 828 157374832 - Ssed_1693 - hypothetical protein 1692 45.83 0 2030438..2031469 + 343 157374833 - Ssed_1694 - putative periplasmic protease 1693 43.79 0 2031573..2032691 - 372 157374834 - Ssed_1695 - hypothetical protein 1694 45.73 0 2032795..2033391 - 198 157374835 - Ssed_1696 - arylesterase 1695 47.54 0 2033408..2034160 + 250 157374836 - Ssed_1697 - ABC transporter related 1696 48.83 0 2034160..2036631 + 823 157374837 - Ssed_1698 - hypothetical protein 1697 48.81 0 2036708..2037631 - 307 157374838 - Ssed_1699 - hypothetical protein 1698 46.02 0 2037876..2038955 + 359 157374839 - Ssed_1700 - hypothetical protein 1699 47.96 0 2038999..2039907 + 302 157374840 - Ssed_1701 - hypothetical protein 1700 40.89 -1 2040060..2040284 - 74 157374841 - Ssed_1702 - hypothetical protein 1701 42.82 -1 2040858..2041289 - 143 157374842 - Ssed_1703 - hypothetical protein 1702 48.51 0 2041698..2043839 - 713 157374843 - Ssed_1704 - phosphate acetyltransferase 1703 45.75 0 2043928..2045127 - 399 157374844 - Ssed_1705 - acetate kinase 1704 46.85 0 2045322..2045765 + 147 157374845 - Ssed_1706 - hypothetical protein 1705 43.59 0 2045811..2046551 - 246 157374846 - Ssed_1707 - pyruvate formate lyase-activating enzyme 1 1706 46.69 0 2046645..2048927 - 760 157374847 - Ssed_1708 - formate C-acetyltransferase 1707 47.95 0 2049531..2051063 - 510 157374848 - Ssed_1709 - hypothetical protein 1708 47.02 0 2051994..2053469 + 491 157374849 - Ssed_1710 - formate/nitrite transporter 1709 54.17 +2 2053538..2053657 - 39 157374850 - Ssed_1711 - LysR family transcriptional regulator 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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