version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1573 45.89 0 1880836..1881456 + 206 157374714 - Ssed_1575 - TonB family protein 1574 43.41 0 1881459..1882718 + 419 157374715 - Ssed_1576 - tetratricopeptide domain-containing protein 1575 39.41 -1 1882783..1883292 - 169 157374716 - Ssed_1577 - diguanylate cyclase 1576 44.52 0 1883416..1885266 + 616 157374717 - Ssed_1578 - hypothetical protein 1577 46.95 0 1885416..1885694 + 92 157374718 - Ssed_1579 - PpiC-type peptidyl-prolyl cis-trans isomerase 1578 43.58 0 1885720..1886256 + 178 157374719 - Ssed_1580 - GCN5-related N-acetyltransferase 1579 45.30 0 1886418..1886651 + 77 157374720 - Ssed_1581 - RNA-binding S4 domain-containing protein 1580 49.35 0 1886669..1887055 + 128 157374721 - Ssed_1582 - hypothetical protein 1581 50.58 +1 1887329..1889299 + 656 157374722 - Ssed_1583 - hypothetical protein 1582 48.42 0 1889375..1890262 - 295 157374723 - Ssed_1584 - LysR family transcriptional regulator 1583 53.72 +1 1890409..1891188 + 259 157374724 - Ssed_1585 - permease 1584 50.48 +1 1892094..1893353 - 419 157374725 - Ssed_1586 - valine--pyruvate transaminase 1585 53.54 +1 1893672..1894928 - 418 157374726 - Ssed_1587 - hypothetical protein 1586 49.39 0 1895262..1896407 + 381 157374727 - Ssed_1588 - nuclease SbcCD, D subunit 1587 49.59 0 1896404..1899460 + 1018 157374728 - Ssed_1589 - exonuclease SbcC, putative 1588 48.94 0 1899859..1901133 + 424 157374729 - Ssed_1590 - peptidase M23B 1589 45.17 0 1901458..1902150 + 230 157374730 - Ssed_1591 - amino acid ABC transporter periplasmic protein 1590 43.85 0 1902147..1902650 - 167 157374731 - Ssed_1592 - hypothetical protein 1591 44.30 0 1902998..1903444 - 148 157374732 - Ssed_1593 - hypothetical protein 1592 43.92 0 1903572..1904969 - 465 157374733 - Ssed_1594 - DEAD/DEAH box helicase domain-containing protein 1593 51.77 +1 1905177..1906109 + 310 157374734 - Ssed_1595 - patatin 1594 48.35 0 1906188..1907186 - 332 157374735 - Ssed_1596 - alcohol dehydrogenase 1595 45.13 0 1907426..1907908 + 160 157374736 - Ssed_1597 - MarR family transcriptional regulator 1596 37.82 -2 1908466..1908978 + 170 157374737 - Ssed_1598 - hypothetical protein 1597 48.27 0 1909199..1909921 + 240 157374738 - Ssed_1599 - hypothetical protein 1598 46.32 0 1910178..1912295 + 705 157374739 - Ssed_1600 - anaerobic ribonucleoside triphosphate reductase 1599 47.53 0 1912492..1912956 + 154 157374740 - Ssed_1601 - anaerobic ribonucleotide reductase-activating protein 1600 47.06 0 1913078..1913434 + 118 157374741 - Ssed_1602 - hypothetical protein 1601 45.31 0 1913730..1914347 + 205 157374742 - Ssed_1603 - GTP cyclohydrolase II 1602 47.99 0 1914419..1915237 + 272 157374743 - Ssed_1604 - hypothetical protein 1603 47.07 0 1915261..1916148 - 295 157374744 - Ssed_1605 - LysR family transcriptional regulator 1604 49.90 0 1916292..1917269 + 325 157374745 - Ssed_1606 - putative adh_zinc, zinc-binding dehydrogenase 1605 51.53 +1 1917303..1918022 + 239 157374746 - Ssed_1607 - short-chain dehydrogenase/reductase SDR 1606 49.64 0 1918105..1919637 - 510 157374747 - Ssed_1608 - XRE family transcriptional regulator 1607 43.74 0 1919845..1920363 + 172 157374748 - Ssed_1609 - malate synthase 1608 43.42 0 1920475..1920831 - 118 157374749 - Ssed_1610 - hypothetical protein 1609 48.98 0 1920959..1923367 - 802 157374750 - Ssed_1611 - peptidase S8 and S53, subtilisin, kexin, sedolisin 1610 46.37 0 1923994..1924392 - 132 157374751 - Ssed_1612 - rhodanese domain-containing protein 1611 39.73 -1 1924502..1924720 - 72 157374752 - Ssed_1613 - hypothetical protein 1612 48.33 0 1924798..1928097 - 1099 157374753 - Ssed_1614 - acriflavin resistance protein 1613 48.85 0 1928108..1929151 - 347 157374754 - Ssed_1615 - RND family efflux transporter MFP subunit 1614 44.63 0 1929311..1930027 - 238 157374755 - Ssed_1616 - hypothetical protein 1615 46.61 0 1930111..1930494 - 127 157374756 - Ssed_1617 - hypothetical protein 1616 44.37 0 1930627..1931949 - 440 157374757 - Ssed_1618 - membrane protein involved in aromatic hydrocarbon degradation 1617 47.52 0 1932317..1933768 - 483 157374758 - Ssed_1619 - sodium/proline symporter 1618 46.24 0 1933919..1934623 - 234 157374759 - Ssed_1620 - hypothetical protein 1619 42.91 -1 1934616..1935179 - 187 157374760 - Ssed_1621 - RNA polymerase sigma factor 1620 47.77 0 1935287..1936921 - 544 157374761 - Ssed_1622 - hypothetical protein 1621 49.41 0 1937004..1938938 - 644 157374762 - Ssed_1623 - TPR repeat-containing protein 1622 49.75 0 1938941..1939933 - 330 157374763 - Ssed_1624 - von Willebrand factor, type A 1623 47.87 0 1939927..1940442 - 171 157374764 - Ssed_1625 - hypothetical protein 1624 47.63 0 1940442..1941371 - 309 157374765 - Ssed_1626 - hypothetical protein 1625 49.53 0 1941372..1942328 - 318 157374766 - Ssed_1627 - ATPase 1626 49.43 0 1942774..1944084 + 436 157374767 - Ssed_1628 - 3-ketoacyl-CoA thiolase 1627 47.91 0 1944090..1946237 + 715 157374768 - Ssed_1629 - multifunctional fatty acid oxidation complex subunit alpha 1628 46.22 0 1946507..1946731 + 74 157374769 - Ssed_1630 - hypothetical protein 1629 41.67 -1 1946865..1946984 - 39 157374770 - Ssed_1631 - hypothetical protein 1630 46.37 0 1947003..1947608 - 201 157374771 - Ssed_1632 - hypothetical protein 1631 39.53 -1 1947752..1952095 - 1447 157374772 - Ssed_1633 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 1632 45.34 0 1952522..1955311 - 929 157374773 - Ssed_1634 - peptidase M16 domain-containing protein 1633 48.67 0 1955580..1956068 + 162 157374774 - Ssed_1635 - phosphohistidine phosphatase, SixA 1634 46.89 0 1956330..1956860 - 176 157374775 - Ssed_1636 - hypothetical protein 1635 45.40 0 1957036..1957980 + 314 157374776 - Ssed_1637 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1636 51.23 +1 1958129..1959223 + 364 157374777 - Ssed_1638 - chorismate synthase 1637 49.05 0 1959434..1960591 + 385 157374778 - Ssed_1639 - major facilitator transporter 1638 50.84 +1 1960677..1961801 + 374 157374779 - Ssed_1640 - hypothetical protein 1639 44.81 0 1961866..1962135 + 89 157374780 - Ssed_1641 - hypothetical protein 1640 49.63 0 1962152..1962685 + 177 157374781 - Ssed_1642 - tRNA/rRNA methyltransferase (SpoU) 1641 49.28 0 1962782..1964920 - 712 157374782 - Ssed_1643 - FAD dependent oxidoreductase 1642 49.92 0 1965031..1966242 + 403 157374783 - Ssed_1644 - beta-ketoacyl synthase 1643 41.55 -1 1966518..1967552 - 344 157374784 - Ssed_1645 - hypothetical protein 1644 40.55 -1 1967540..1968121 - 193 157374785 - Ssed_1646 - protein-glutamate methylesterase 1645 39.76 -1 1968125..1968964 - 279 157374786 - Ssed_1647 - protein-glutamate O-methyltransferase 1646 41.58 -1 1968966..1973090 - 1374 157374787 - Ssed_1648 - histidine kinase 1647 49.05 0 1973396..1974559 + 387 157374788 - Ssed_1649 - D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region 1648 46.71 0 1974562..1975578 + 338 157374789 - Ssed_1650 - aspartate-semialdehyde dehydrogenase 1649 50.49 +1 1975792..1978629 + 945 157374790 - Ssed_1651 - hypothetical protein 1650 48.35 0 1978822..1979607 + 261 157374791 - Ssed_1652 - tRNA-pseudouridine synthase I 1651 48.97 0 1979683..1980948 + 421 157374792 - Ssed_1653 - dihydrofolate synthase 1652 45.57 0 1981086..1981706 + 206 157374793 - Ssed_1654 - sporulation domain-containing protein 1653 45.60 0 1981820..1982308 + 162 157374794 - Ssed_1655 - colicin V production protein 1654 47.46 0 1982410..1983924 + 504 157374795 - Ssed_1656 - amidophosphoribosyltransferase 1655 44.86 0 1984188..1984664 + 158 157374796 - Ssed_1657 - hypothetical protein 1656 50.93 +1 1984830..1986869 + 679 157374797 - Ssed_1658 - DNA topoisomerase III 1657 46.27 0 1986886..1987086 - 66 157374798 - Ssed_1659 - hypothetical protein 1658 46.60 0 1987629..1988495 + 288 157374799 - Ssed_1660 - hypothetical protein 1659 51.40 +1 1989276..1990565 - 429 157374800 - Ssed_1661 - alpha/beta hydrolase fold 1660 48.51 0 1990806..1991477 + 223 157374801 - Ssed_1662 - beta-lactamase domain-containing protein 1661 46.39 0 1991813..1992325 + 170 157374802 - Ssed_1663 - hypothetical protein 1662 47.48 0 1992640..1994088 + 482 157374803 - Ssed_1664 - methyl-accepting chemotaxis sensory transducer 1663 50.87 +1 1994466..1996484 - 672 157374804 - Ssed_1665 - NADH:flavin oxidoreductase/NADH oxidase 1664 48.66 0 1996593..1997675 + 360 157374805 - Ssed_1666 - helix-turn-helix-domain-containing protein 1665 48.66 0 1997705..1999426 - 573 157374806 - Ssed_1667 - long-chain-fatty-acid--CoA ligase 1666 50.56 +1 1999811..2000617 - 268 157374807 - Ssed_1668 - exonuclease III 1667 48.67 0 2000654..2000953 - 99 157374808 - Ssed_1669 - YciI-like protein 1668 41.67 -1 2001014..2001565 - 183 157374809 - Ssed_1670 - intracellular septation protein A 1669 47.76 0 2001694..2003211 - 505 157374810 - Ssed_1671 - type II secretory pathway ATPase ExeA 1670 48.12 0 2003566..2005641 - 691 157374811 - Ssed_1672 - hypothetical protein 1671 45.94 0 2005868..2007787 - 639 157374812 - Ssed_1673 - receptor, putative 1672 46.23 0 2008015..2008425 - 136 157374813 - Ssed_1674 - nickel-responsive regulator 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0