version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1521 47.25 0 1811126..1813237 - 703 157374662 - Ssed_1523 - outer membrane protein precursor MtrB 1522 49.20 0 1813253..1814254 - 333 157374663 - Ssed_1524 - cytochrome c family protein 1523 48.06 0 1814334..1816316 - 660 157374664 - Ssed_1525 - decaheme cytochrome c 1524 47.50 0 1816751..1818967 - 738 157374665 - Ssed_1526 - decaheme cytochrome c 1525 49.61 0 1819448..1821616 - 722 157374666 - Ssed_1527 - decaheme cytochrome c 1526 50.49 +1 1821682..1823622 - 646 157374667 - Ssed_1528 - decaheme cytochrome c MtrF 1527 47.71 0 1823757..1825892 - 711 157374668 - Ssed_1529 - outer membrane protein, putative 1528 48.14 0 1825908..1826873 - 321 157374669 - Ssed_1530 - cytochrome c family protein 1529 44.71 0 1827301..1827555 + 84 157374670 - Ssed_1531 - FeoA family protein 1530 47.89 0 1827548..1829842 + 764 157374671 - Ssed_1532 - ferrous iron transport protein B 1531 43.75 0 1830005..1831675 + 556 157374672 - Ssed_1533 - glutaminyl-tRNA synthetase 1532 43.38 0 1831844..1832440 - 198 157374673 - Ssed_1534 - hypothetical protein 1533 43.37 0 1832806..1833582 + 258 157374674 - Ssed_1535 - tRNA--hydroxylase 1534 44.31 0 1833661..1834389 - 242 157374675 - Ssed_1536 - UDP-2,3-diacylglucosamine hydrolase 1535 42.38 -1 1834399..1834962 - 187 157374676 - Ssed_1537 - peptidylprolyl isomerase 1536 46.23 0 1835163..1836542 + 459 157374677 - Ssed_1538 - cysteinyl-tRNA synthetase 1537 49.59 0 1836651..1837505 - 284 157374678 - Ssed_1539 - methylenetetrahydrofolate dehydrogenase (NADP(+)) 1538 43.68 0 1838635..1839939 + 434 157374679 - Ssed_1540 - trigger factor 1539 45.10 0 1840030..1840641 + 203 157374680 - Ssed_1541 - ATP-dependent Clp protease proteolytic subunit 1540 45.07 0 1840725..1842002 + 425 157374681 - Ssed_1542 - ATP-dependent protease ATP-binding subunit 1541 46.76 0 1842153..1844498 + 781 157374682 - Ssed_1543 - endopeptidase La 1542 44.32 0 1844772..1845044 + 90 157374683 - Ssed_1544 - histone family protein DNA-binding protein 1543 45.50 0 1845253..1847118 + 621 157374684 - Ssed_1545 - PpiC-type peptidyl-prolyl cis-trans isomerase 1544 43.33 0 1847387..1847596 - 69 157374685 - Ssed_1546 - TOBE domain-containing protein 1545 46.38 0 1847748..1848950 - 400 157374686 - Ssed_1547 - trans-2-enoyl-CoA reductase 1546 43.00 -1 1849076..1849861 - 261 157374687 - Ssed_1548 - ABC transporter related 1547 46.84 0 1849836..1850849 - 337 157374688 - Ssed_1549 - oligopeptide/dipeptide ABC transporter, ATPase subunit 1548 47.36 0 1850867..1851757 - 296 157374689 - Ssed_1550 - binding-protein-dependent transport systems inner membrane component 1549 46.32 0 1851744..1852775 - 343 157374690 - Ssed_1551 - binding-protein-dependent transport systems inner membrane component 1550 44.32 0 1852775..1854430 - 551 157374691 - Ssed_1552 - extracellular solute-binding protein 1551 45.79 0 1854505..1855572 - 355 157374692 - Ssed_1553 - sigma-54 dependent trancsriptional regulator 1552 43.57 0 1855750..1856433 + 227 157374693 - Ssed_1554 - phage shock protein A, PspA 1553 41.88 -1 1856454..1856687 + 77 157374694 - Ssed_1555 - phage shock protein B 1554 38.38 -2 1856680..1857075 + 131 157374695 - Ssed_1556 - phage shock protein C, PspC 1555 46.94 0 1857125..1858579 + 484 157374696 - Ssed_1557 - protein of unknown function DUF463, YcjX family protein 1556 45.80 0 1858670..1859776 + 368 157374697 - Ssed_1558 - hypothetical protein 1557 49.02 0 1859954..1861132 + 392 157374698 - Ssed_1559 - methionine gamma-lyase 1558 44.99 0 1861251..1862648 - 465 157374699 - Ssed_1560 - anion transporter 1559 42.77 -1 1863047..1863364 + 105 157374700 - Ssed_1561 - helix-hairpin-helix repeat-containing competence protein ComEA 1560 41.11 -1 1863728..1863997 - 89 157374701 - Ssed_1562 - hypothetical protein 1561 46.32 0 1864388..1865080 - 230 157374702 - Ssed_1563 - hypothetical protein 1562 40.96 -1 1865131..1865799 - 222 157374703 - Ssed_1564 - primosomal replication protein N'', putative 1563 45.99 0 1865796..1866569 - 257 157374704 - Ssed_1565 - hypothetical protein 1564 45.65 0 1866578..1868656 - 692 157374705 - Ssed_1566 - ATP-dependent DNA helicase DinG 1565 44.04 0 1868850..1871231 + 793 157374706 - Ssed_1567 - DNA polymerase II 1566 42.74 -1 1871461..1872672 + 403 157374707 - Ssed_1568 - porin 1567 45.44 0 1873498..1876107 + 869 157374708 - Ssed_1569 - TonB-dependent receptor 1568 40.75 -1 1876204..1877160 + 318 157374709 - Ssed_1570 - methyltransferase type 11 1569 43.30 0 1877755..1878537 + 260 157374710 - Ssed_1571 - hypothetical protein 1570 46.02 0 1878537..1879892 + 451 157374711 - Ssed_1572 - MotA/TolQ/ExbB proton channel 1571 48.00 0 1879892..1880416 + 174 157374712 - Ssed_1573 - MotA/TolQ/ExbB proton channel 1572 45.19 0 1880430..1880834 + 134 157374713 - Ssed_1574 - biopolymer transport protein ExbD/TolR 1573 45.89 0 1880836..1881456 + 206 157374714 - Ssed_1575 - TonB family protein 1574 43.41 0 1881459..1882718 + 419 157374715 - Ssed_1576 - tetratricopeptide domain-containing protein 1575 39.41 -1 1882783..1883292 - 169 157374716 - Ssed_1577 - diguanylate cyclase 1576 44.52 0 1883416..1885266 + 616 157374717 - Ssed_1578 - hypothetical protein 1577 46.95 0 1885416..1885694 + 92 157374718 - Ssed_1579 - PpiC-type peptidyl-prolyl cis-trans isomerase 1578 43.58 0 1885720..1886256 + 178 157374719 - Ssed_1580 - GCN5-related N-acetyltransferase 1579 45.30 0 1886418..1886651 + 77 157374720 - Ssed_1581 - RNA-binding S4 domain-containing protein 1580 49.35 0 1886669..1887055 + 128 157374721 - Ssed_1582 - hypothetical protein 1581 50.58 +1 1887329..1889299 + 656 157374722 - Ssed_1583 - hypothetical protein 1582 48.42 0 1889375..1890262 - 295 157374723 - Ssed_1584 - LysR family transcriptional regulator 1583 53.72 +1 1890409..1891188 + 259 157374724 - Ssed_1585 - permease 1584 50.48 +1 1892094..1893353 - 419 157374725 - Ssed_1586 - valine--pyruvate transaminase 1585 53.54 +1 1893672..1894928 - 418 157374726 - Ssed_1587 - hypothetical protein 1586 49.39 0 1895262..1896407 + 381 157374727 - Ssed_1588 - nuclease SbcCD, D subunit 1587 49.59 0 1896404..1899460 + 1018 157374728 - Ssed_1589 - exonuclease SbcC, putative 1588 48.94 0 1899859..1901133 + 424 157374729 - Ssed_1590 - peptidase M23B 1589 45.17 0 1901458..1902150 + 230 157374730 - Ssed_1591 - amino acid ABC transporter periplasmic protein 1590 43.85 0 1902147..1902650 - 167 157374731 - Ssed_1592 - hypothetical protein 1591 44.30 0 1902998..1903444 - 148 157374732 - Ssed_1593 - hypothetical protein 1592 43.92 0 1903572..1904969 - 465 157374733 - Ssed_1594 - DEAD/DEAH box helicase domain-containing protein 1593 51.77 +1 1905177..1906109 + 310 157374734 - Ssed_1595 - patatin 1594 48.35 0 1906188..1907186 - 332 157374735 - Ssed_1596 - alcohol dehydrogenase 1595 45.13 0 1907426..1907908 + 160 157374736 - Ssed_1597 - MarR family transcriptional regulator 1596 37.82 -2 1908466..1908978 + 170 157374737 - Ssed_1598 - hypothetical protein 1597 48.27 0 1909199..1909921 + 240 157374738 - Ssed_1599 - hypothetical protein 1598 46.32 0 1910178..1912295 + 705 157374739 - Ssed_1600 - anaerobic ribonucleoside triphosphate reductase 1599 47.53 0 1912492..1912956 + 154 157374740 - Ssed_1601 - anaerobic ribonucleotide reductase-activating protein 1600 47.06 0 1913078..1913434 + 118 157374741 - Ssed_1602 - hypothetical protein 1601 45.31 0 1913730..1914347 + 205 157374742 - Ssed_1603 - GTP cyclohydrolase II 1602 47.99 0 1914419..1915237 + 272 157374743 - Ssed_1604 - hypothetical protein 1603 47.07 0 1915261..1916148 - 295 157374744 - Ssed_1605 - LysR family transcriptional regulator 1604 49.90 0 1916292..1917269 + 325 157374745 - Ssed_1606 - putative adh_zinc, zinc-binding dehydrogenase 1605 51.53 +1 1917303..1918022 + 239 157374746 - Ssed_1607 - short-chain dehydrogenase/reductase SDR 1606 49.64 0 1918105..1919637 - 510 157374747 - Ssed_1608 - XRE family transcriptional regulator 1607 43.74 0 1919845..1920363 + 172 157374748 - Ssed_1609 - malate synthase 1608 43.42 0 1920475..1920831 - 118 157374749 - Ssed_1610 - hypothetical protein 1609 48.98 0 1920959..1923367 - 802 157374750 - Ssed_1611 - peptidase S8 and S53, subtilisin, kexin, sedolisin 1610 46.37 0 1923994..1924392 - 132 157374751 - Ssed_1612 - rhodanese domain-containing protein 1611 39.73 -1 1924502..1924720 - 72 157374752 - Ssed_1613 - hypothetical protein 1612 48.33 0 1924798..1928097 - 1099 157374753 - Ssed_1614 - acriflavin resistance protein 1613 48.85 0 1928108..1929151 - 347 157374754 - Ssed_1615 - RND family efflux transporter MFP subunit 1614 44.63 0 1929311..1930027 - 238 157374755 - Ssed_1616 - hypothetical protein 1615 46.61 0 1930111..1930494 - 127 157374756 - Ssed_1617 - hypothetical protein 1616 44.37 0 1930627..1931949 - 440 157374757 - Ssed_1618 - membrane protein involved in aromatic hydrocarbon degradation 1617 47.52 0 1932317..1933768 - 483 157374758 - Ssed_1619 - sodium/proline symporter 1618 46.24 0 1933919..1934623 - 234 157374759 - Ssed_1620 - hypothetical protein 1619 42.91 -1 1934616..1935179 - 187 157374760 - Ssed_1621 - RNA polymerase sigma factor 1620 47.77 0 1935287..1936921 - 544 157374761 - Ssed_1622 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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