version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1458 52.63 +1 1731907..1733823 + 638 157374599 - Ssed_1460 - AMP-dependent synthetase and ligase 1459 50.64 +1 1734400..1735953 + 517 157374600 - Ssed_1461 - 6-phosphogluconate dehydrogenase 1460 42.68 -1 1736017..1737429 - 470 157374601 - Ssed_1462 - HD-GYP domain-containing protein 1461 46.67 0 1737611..1738510 + 299 157374602 - Ssed_1463 - hypothetical protein 1462 50.86 +1 1738604..1739476 - 290 157374603 - Ssed_1464 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1463 48.70 0 1739898..1740821 + 307 157374604 - Ssed_1465 - short-chain dehydrogenase/reductase SDR 1464 48.33 0 1740909..1741775 + 288 157374605 - Ssed_1466 - palmitoyl-CoA hydrolase 1465 43.85 0 1741906..1742295 + 129 157374606 - Ssed_1467 - hypothetical protein 1466 47.47 0 1742405..1742998 + 197 157374607 - Ssed_1468 - hypothetical protein 1467 45.83 0 1743333..1743980 + 215 157374608 - Ssed_1469 - outer membrane protein W 1468 48.83 0 1744071..1744838 - 255 157374609 - Ssed_1470 - short-chain dehydrogenase/reductase SDR 1469 47.26 0 1745326..1745727 + 133 157374610 - Ssed_1471 - hypothetical protein 1470 46.14 0 1745811..1746755 + 314 157374611 - Ssed_1472 - homoserine O-succinyltransferase 1471 54.74 +2 1747063..1748253 + 396 157374612 - Ssed_1473 - Acetyl-CoA C-acetyltransferase 1472 51.39 +1 1748425..1749930 + 501 157374613 - Ssed_1474 - methylmalonate-semialdehyde dehydrogenase 1473 51.47 +1 1750148..1751305 + 385 157374614 - Ssed_1475 - butyryl-CoA dehydrogenase 1474 52.84 +1 1751447..1752220 + 257 157374615 - Ssed_1476 - enoyl-CoA hydratase 1475 51.34 +1 1752220..1753380 + 386 157374616 - Ssed_1477 - enoyl-CoA hydratase/isomerase 1476 50.27 0 1753553..1754479 + 308 157374617 - Ssed_1478 - 3-hydroxyisobutyrate dehydrogenase 1477 50.07 0 1754484..1755242 + 252 157374618 - Ssed_1479 - 3-ketoacyl-(acyl-carrier-protein) reductase 1478 39.74 -1 1755480..1755791 - 103 157374619 - Ssed_1480 - hypothetical protein 1479 48.79 0 1756141..1758075 + 644 157374620 - Ssed_1481 - radical SAM family protein 1480 39.36 -1 1758508..1758756 + 82 157374621 - Ssed_1482 - hypothetical protein 1481 50.83 +1 1758793..1760844 + 683 157374622 - Ssed_1483 - peptidase S9 prolyl oligopeptidase 1482 46.46 0 1760964..1761344 - 126 157374623 - Ssed_1484 - MerR family transcriptional regulator 1483 51.53 +1 1761485..1763743 + 752 157374624 - Ssed_1485 - copper-translocating P-type ATPase 1484 46.10 0 1763921..1765495 + 524 157374625 - Ssed_1486 - ABC transporter-related protein 1485 50.33 0 1765809..1767020 - 403 157374626 - Ssed_1487 - putative NupC family protein (permease) 1486 52.13 +1 1767595..1768956 - 453 157374627 - Ssed_1488 - leucyl aminopeptidase 1487 46.12 0 1769146..1769544 - 132 157374628 - Ssed_1489 - hypothetical protein 1488 48.29 0 1769950..1771407 + 485 157374629 - Ssed_1490 - PTR2 family transport protein 1489 48.15 0 1771527..1772282 - 251 157374630 - Ssed_1491 - putative ribonuclease HI 1490 48.11 0 1772432..1773040 - 202 157374631 - Ssed_1492 - hypothetical protein 1491 46.80 0 1773074..1773667 - 197 157374632 - Ssed_1493 - lysine exporter protein (LysE/YggA) 1492 51.42 +1 1773863..1774426 + 187 157374633 - Ssed_1494 - hypothetical protein 1493 43.55 0 1774845..1775813 + 322 157374634 - Ssed_1495 - hypothetical protein 1494 50.95 +1 1775972..1778122 - 716 157374635 - Ssed_1496 - TonB-dependent receptor 1495 41.24 -1 1778291..1779454 - 387 157374636 - Ssed_1497 - NirV precursor 1496 48.50 0 1779969..1782032 - 687 157374637 - Ssed_1498 - methyl-accepting chemotaxis sensory transducer 1497 45.50 0 1782455..1783309 - 284 157374638 - Ssed_1499 - hypothetical protein 1498 43.91 0 1783547..1784047 - 166 157374639 - Ssed_1500 - amino acid-binding ACT domain-containing protein 1499 48.25 0 1784230..1786488 + 752 157374640 - Ssed_1501 - binding-protein-dependent transport systems inner membrane component 1500 49.43 0 1786659..1788311 + 550 157374641 - Ssed_1502 - phosphate ABC transporter, inner membrane subunit PstA 1501 46.89 0 1788431..1789249 + 272 157374642 - Ssed_1503 - phosphate ABC transporter, ATPase subunit 1502 46.27 0 1789369..1790079 + 236 157374643 - Ssed_1504 - transcriptional regulator PhoU 1503 45.44 0 1790478..1792484 + 668 157374644 - Ssed_1505 - choline/carnitine/betaine transporter 1504 44.35 0 1792680..1793042 + 120 157374645 - Ssed_1506 - hypothetical protein 1505 47.39 0 1793126..1793374 - 82 157374646 - Ssed_1507 - hypothetical protein 1506 44.11 0 1793675..1794853 + 392 157374647 - Ssed_1508 - methyl-accepting chemotaxis protein 1507 48.40 0 1795234..1796514 + 426 157374648 - Ssed_1509 - hypothetical protein 1508 50.00 0 1796774..1797823 + 349 157374649 - Ssed_1510 - 3-oxoacyl-(acyl carrier protein) synthase III 1509 46.51 0 1797987..1798874 + 295 157374650 - Ssed_1511 - alpha/beta hydrolase fold 1510 48.69 0 1798971..1800728 + 585 157374651 - Ssed_1512 - peptide synthase 1511 51.00 +1 1800734..1801831 + 365 157374652 - Ssed_1513 - steroid dehydrogenase 1512 50.22 0 1801989..1802438 + 149 157374653 - Ssed_1514 - glutathione-dependent formaldehyde-activating, GFA 1513 49.00 0 1802495..1803343 - 282 157374654 - Ssed_1515 - pseudouridine synthase 1514 46.97 0 1803411..1803740 - 109 157374655 - Ssed_1516 - small multidrug resistance protein 1515 51.34 +1 1804267..1806015 + 582 157374656 - Ssed_1517 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit 1516 47.15 0 1806057..1807214 - 385 157374657 - Ssed_1518 - transcriptional regulator, CdaR 1517 46.11 0 1807414..1808133 - 239 157374658 - Ssed_1519 - hypothetical protein 1518 43.11 0 1808366..1809337 - 323 157374659 - Ssed_1520 - GGDEF domain-containing protein 1519 46.51 0 1809479..1810123 - 214 157374660 - Ssed_1521 - phage SPO1 DNA polymerase domain-containing protein 1520 46.06 0 1810167..1810826 - 219 157374661 - Ssed_1522 - hypothetical protein 1521 47.25 0 1811126..1813237 - 703 157374662 - Ssed_1523 - outer membrane protein precursor MtrB 1522 49.20 0 1813253..1814254 - 333 157374663 - Ssed_1524 - cytochrome c family protein 1523 48.06 0 1814334..1816316 - 660 157374664 - Ssed_1525 - decaheme cytochrome c 1524 47.50 0 1816751..1818967 - 738 157374665 - Ssed_1526 - decaheme cytochrome c 1525 49.61 0 1819448..1821616 - 722 157374666 - Ssed_1527 - decaheme cytochrome c 1526 50.49 +1 1821682..1823622 - 646 157374667 - Ssed_1528 - decaheme cytochrome c MtrF 1527 47.71 0 1823757..1825892 - 711 157374668 - Ssed_1529 - outer membrane protein, putative 1528 48.14 0 1825908..1826873 - 321 157374669 - Ssed_1530 - cytochrome c family protein 1529 44.71 0 1827301..1827555 + 84 157374670 - Ssed_1531 - FeoA family protein 1530 47.89 0 1827548..1829842 + 764 157374671 - Ssed_1532 - ferrous iron transport protein B 1531 43.75 0 1830005..1831675 + 556 157374672 - Ssed_1533 - glutaminyl-tRNA synthetase 1532 43.38 0 1831844..1832440 - 198 157374673 - Ssed_1534 - hypothetical protein 1533 43.37 0 1832806..1833582 + 258 157374674 - Ssed_1535 - tRNA--hydroxylase 1534 44.31 0 1833661..1834389 - 242 157374675 - Ssed_1536 - UDP-2,3-diacylglucosamine hydrolase 1535 42.38 -1 1834399..1834962 - 187 157374676 - Ssed_1537 - peptidylprolyl isomerase 1536 46.23 0 1835163..1836542 + 459 157374677 - Ssed_1538 - cysteinyl-tRNA synthetase 1537 49.59 0 1836651..1837505 - 284 157374678 - Ssed_1539 - methylenetetrahydrofolate dehydrogenase (NADP(+)) 1538 43.68 0 1838635..1839939 + 434 157374679 - Ssed_1540 - trigger factor 1539 45.10 0 1840030..1840641 + 203 157374680 - Ssed_1541 - ATP-dependent Clp protease proteolytic subunit 1540 45.07 0 1840725..1842002 + 425 157374681 - Ssed_1542 - ATP-dependent protease ATP-binding subunit 1541 46.76 0 1842153..1844498 + 781 157374682 - Ssed_1543 - endopeptidase La 1542 44.32 0 1844772..1845044 + 90 157374683 - Ssed_1544 - histone family protein DNA-binding protein 1543 45.50 0 1845253..1847118 + 621 157374684 - Ssed_1545 - PpiC-type peptidyl-prolyl cis-trans isomerase 1544 43.33 0 1847387..1847596 - 69 157374685 - Ssed_1546 - TOBE domain-containing protein 1545 46.38 0 1847748..1848950 - 400 157374686 - Ssed_1547 - trans-2-enoyl-CoA reductase 1546 43.00 -1 1849076..1849861 - 261 157374687 - Ssed_1548 - ABC transporter related 1547 46.84 0 1849836..1850849 - 337 157374688 - Ssed_1549 - oligopeptide/dipeptide ABC transporter, ATPase subunit 1548 47.36 0 1850867..1851757 - 296 157374689 - Ssed_1550 - binding-protein-dependent transport systems inner membrane component 1549 46.32 0 1851744..1852775 - 343 157374690 - Ssed_1551 - binding-protein-dependent transport systems inner membrane component 1550 44.32 0 1852775..1854430 - 551 157374691 - Ssed_1552 - extracellular solute-binding protein 1551 45.79 0 1854505..1855572 - 355 157374692 - Ssed_1553 - sigma-54 dependent trancsriptional regulator 1552 43.57 0 1855750..1856433 + 227 157374693 - Ssed_1554 - phage shock protein A, PspA 1553 41.88 -1 1856454..1856687 + 77 157374694 - Ssed_1555 - phage shock protein B 1554 38.38 -2 1856680..1857075 + 131 157374695 - Ssed_1556 - phage shock protein C, PspC 1555 46.94 0 1857125..1858579 + 484 157374696 - Ssed_1557 - protein of unknown function DUF463, YcjX family protein 1556 45.80 0 1858670..1859776 + 368 157374697 - Ssed_1558 - hypothetical protein 1557 49.02 0 1859954..1861132 + 392 157374698 - Ssed_1559 - methionine gamma-lyase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.