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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1419 46.22 0 1686440..1686889 - 149 157374560 - Ssed_1421 - CopG family transcriptional regulator 1420 46.24 0 1686849..1687592 - 247 157374561 - Ssed_1422 - hypothetical protein 1421 44.00 0 1688204..1688428 + 74 157374562 - Ssed_1423 - hypothetical protein 1422 44.22 0 1688573..1688875 + 100 157374563 - Ssed_1424 - NrfJ-related protein 1423 44.32 0 1689018..1689563 + 181 157374564 - Ssed_1425 - GCN5-related N-acetyltransferase 1424 46.44 0 1689639..1690088 - 149 157374565 - Ssed_1426 - hypothetical protein 1425 48.28 0 1690454..1692199 - 581 157374566 - Ssed_1427 - 5'-nucleotidase 1426 48.66 0 1692487..1693569 - 360 157374567 - Ssed_1428 - hypothetical protein 1427 45.37 0 1693728..1694849 + 373 157374568 - Ssed_1429 - hypothetical protein 1428 45.75 0 1694883..1695671 + 262 157374569 - Ssed_1430 - type IV pilus biogenesis/stability protein PilW 1429 48.87 0 1695671..1696603 + 310 157374570 - Ssed_1431 - hypothetical protein 1430 48.30 0 1696707..1697822 + 371 157374571 - Ssed_1432 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1431 46.82 0 1697982..1699256 + 424 157374572 - Ssed_1433 - histidine--tRNA ligase 1432 47.67 0 1699270..1699890 + 206 157374573 - Ssed_1434 - tetratricopeptide TPR_4 1433 48.06 0 1699902..1701089 + 395 157374574 - Ssed_1435 - outer membrane protein assembly complex subunit YfgL 1434 50.17 0 1701194..1702660 + 488 157374575 - Ssed_1436 - GTP-binding protein EngA 1435 44.59 0 1703214..1704386 + 390 157374576 - Ssed_1437 - MerR family transcriptional regulator 1436 42.84 -1 1705153..1706625 + 490 157374577 - Ssed_1438 - RNA-directed DNA polymerase 1437 54.03 +1 1706979..1707635 - 218 157374578 - Ssed_1439 - hexapaptide repeat-containing transferase 1438 50.55 +1 1707604..1708329 - 241 157374579 - Ssed_1440 - hypothetical protein 1439 48.44 0 1708390..1708773 - 127 157374580 - Ssed_1441 - putative lipoprotein 1440 49.77 0 1708896..1710215 - 439 157374581 - Ssed_1442 - hypothetical protein 1441 46.67 0 1710212..1713286 - 1024 157374582 - Ssed_1443 - amidohydrolase 1442 43.00 -1 1713446..1713838 - 130 157374583 - Ssed_1444 - histone family protein nucleoid-structuring protein H-NS 1443 46.13 0 1714159..1714908 + 249 157374584 - Ssed_1445 - electron transfer flavoprotein beta-subunit 1444 49.78 0 1714908..1715831 + 307 157374585 - Ssed_1446 - electron transfer flavoprotein, alpha subunit 1445 48.28 0 1716289..1717854 + 521 157374586 - Ssed_1447 - Na+/H+ antiporter NhaC 1446 48.50 0 1717995..1720163 - 722 157374587 - Ssed_1448 - peptidyl-dipeptidase Dcp 1447 46.46 0 1720444..1721022 + 192 157374588 - Ssed_1449 - thymidine kinase 1448 49.54 0 1721196..1721633 - 145 157374589 - Ssed_1450 - hypothetical protein 1449 45.42 0 1721765..1722343 - 192 157374590 - Ssed_1451 - methylation site containing protein 1450 49.32 0 1722727..1723383 - 218 157374591 - Ssed_1452 - 3-oxoacid CoA-transferase 1451 53.08 +1 1723400..1724113 - 237 157374592 - Ssed_1453 - 3-oxoacid CoA-transferase 1452 51.85 +1 1724127..1725017 - 296 157374593 - Ssed_1454 - pyruvate carboxyltransferase 1453 53.03 +1 1725019..1727094 - 691 157374594 - Ssed_1455 - carbamoyl-phosphate synthase L chain, ATP-binding 1454 50.24 0 1727096..1727935 - 279 157374595 - Ssed_1456 - enoyl-CoA hydratase/isomerase 1455 53.92 +1 1728064..1729671 - 535 157374596 - Ssed_1457 - propionyl-CoA carboxylase 1456 51.71 +1 1729740..1730909 - 389 157374597 - Ssed_1458 - acyl-CoA dehydrogenase domain-containing protein 1457 46.12 0 1730970..1731368 - 132 157374598 - Ssed_1459 - MerR family transcriptional regulator 1458 52.63 +1 1731907..1733823 + 638 157374599 - Ssed_1460 - AMP-dependent synthetase and ligase 1459 50.64 +1 1734400..1735953 + 517 157374600 - Ssed_1461 - 6-phosphogluconate dehydrogenase 1460 42.68 -1 1736017..1737429 - 470 157374601 - Ssed_1462 - HD-GYP domain-containing protein 1461 46.67 0 1737611..1738510 + 299 157374602 - Ssed_1463 - hypothetical protein 1462 50.86 +1 1738604..1739476 - 290 157374603 - Ssed_1464 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1463 48.70 0 1739898..1740821 + 307 157374604 - Ssed_1465 - short-chain dehydrogenase/reductase SDR 1464 48.33 0 1740909..1741775 + 288 157374605 - Ssed_1466 - palmitoyl-CoA hydrolase 1465 43.85 0 1741906..1742295 + 129 157374606 - Ssed_1467 - hypothetical protein 1466 47.47 0 1742405..1742998 + 197 157374607 - Ssed_1468 - hypothetical protein 1467 45.83 0 1743333..1743980 + 215 157374608 - Ssed_1469 - outer membrane protein W 1468 48.83 0 1744071..1744838 - 255 157374609 - Ssed_1470 - short-chain dehydrogenase/reductase SDR 1469 47.26 0 1745326..1745727 + 133 157374610 - Ssed_1471 - hypothetical protein 1470 46.14 0 1745811..1746755 + 314 157374611 - Ssed_1472 - homoserine O-succinyltransferase 1471 54.74 +2 1747063..1748253 + 396 157374612 - Ssed_1473 - Acetyl-CoA C-acetyltransferase 1472 51.39 +1 1748425..1749930 + 501 157374613 - Ssed_1474 - methylmalonate-semialdehyde dehydrogenase 1473 51.47 +1 1750148..1751305 + 385 157374614 - Ssed_1475 - butyryl-CoA dehydrogenase 1474 52.84 +1 1751447..1752220 + 257 157374615 - Ssed_1476 - enoyl-CoA hydratase 1475 51.34 +1 1752220..1753380 + 386 157374616 - Ssed_1477 - enoyl-CoA hydratase/isomerase 1476 50.27 0 1753553..1754479 + 308 157374617 - Ssed_1478 - 3-hydroxyisobutyrate dehydrogenase 1477 50.07 0 1754484..1755242 + 252 157374618 - Ssed_1479 - 3-ketoacyl-(acyl-carrier-protein) reductase 1478 39.74 -1 1755480..1755791 - 103 157374619 - Ssed_1480 - hypothetical protein 1479 48.79 0 1756141..1758075 + 644 157374620 - Ssed_1481 - radical SAM family protein 1480 39.36 -1 1758508..1758756 + 82 157374621 - Ssed_1482 - hypothetical protein 1481 50.83 +1 1758793..1760844 + 683 157374622 - Ssed_1483 - peptidase S9 prolyl oligopeptidase 1482 46.46 0 1760964..1761344 - 126 157374623 - Ssed_1484 - MerR family transcriptional regulator 1483 51.53 +1 1761485..1763743 + 752 157374624 - Ssed_1485 - copper-translocating P-type ATPase 1484 46.10 0 1763921..1765495 + 524 157374625 - Ssed_1486 - ABC transporter-related protein 1485 50.33 0 1765809..1767020 - 403 157374626 - Ssed_1487 - putative NupC family protein (permease) 1486 52.13 +1 1767595..1768956 - 453 157374627 - Ssed_1488 - leucyl aminopeptidase 1487 46.12 0 1769146..1769544 - 132 157374628 - Ssed_1489 - hypothetical protein 1488 48.29 0 1769950..1771407 + 485 157374629 - Ssed_1490 - PTR2 family transport protein 1489 48.15 0 1771527..1772282 - 251 157374630 - Ssed_1491 - putative ribonuclease HI 1490 48.11 0 1772432..1773040 - 202 157374631 - Ssed_1492 - hypothetical protein 1491 46.80 0 1773074..1773667 - 197 157374632 - Ssed_1493 - lysine exporter protein (LysE/YggA) 1492 51.42 +1 1773863..1774426 + 187 157374633 - Ssed_1494 - hypothetical protein 1493 43.55 0 1774845..1775813 + 322 157374634 - Ssed_1495 - hypothetical protein 1494 50.95 +1 1775972..1778122 - 716 157374635 - Ssed_1496 - TonB-dependent receptor 1495 41.24 -1 1778291..1779454 - 387 157374636 - Ssed_1497 - NirV precursor 1496 48.50 0 1779969..1782032 - 687 157374637 - Ssed_1498 - methyl-accepting chemotaxis sensory transducer 1497 45.50 0 1782455..1783309 - 284 157374638 - Ssed_1499 - hypothetical protein 1498 43.91 0 1783547..1784047 - 166 157374639 - Ssed_1500 - amino acid-binding ACT domain-containing protein 1499 48.25 0 1784230..1786488 + 752 157374640 - Ssed_1501 - binding-protein-dependent transport systems inner membrane component 1500 49.43 0 1786659..1788311 + 550 157374641 - Ssed_1502 - phosphate ABC transporter, inner membrane subunit PstA 1501 46.89 0 1788431..1789249 + 272 157374642 - Ssed_1503 - phosphate ABC transporter, ATPase subunit 1502 46.27 0 1789369..1790079 + 236 157374643 - Ssed_1504 - transcriptional regulator PhoU 1503 45.44 0 1790478..1792484 + 668 157374644 - Ssed_1505 - choline/carnitine/betaine transporter 1504 44.35 0 1792680..1793042 + 120 157374645 - Ssed_1506 - hypothetical protein 1505 47.39 0 1793126..1793374 - 82 157374646 - Ssed_1507 - hypothetical protein 1506 44.11 0 1793675..1794853 + 392 157374647 - Ssed_1508 - methyl-accepting chemotaxis protein 1507 48.40 0 1795234..1796514 + 426 157374648 - Ssed_1509 - hypothetical protein 1508 50.00 0 1796774..1797823 + 349 157374649 - Ssed_1510 - 3-oxoacyl-(acyl carrier protein) synthase III 1509 46.51 0 1797987..1798874 + 295 157374650 - Ssed_1511 - alpha/beta hydrolase fold 1510 48.69 0 1798971..1800728 + 585 157374651 - Ssed_1512 - peptide synthase 1511 51.00 +1 1800734..1801831 + 365 157374652 - Ssed_1513 - steroid dehydrogenase 1512 50.22 0 1801989..1802438 + 149 157374653 - Ssed_1514 - glutathione-dependent formaldehyde-activating, GFA 1513 49.00 0 1802495..1803343 - 282 157374654 - Ssed_1515 - pseudouridine synthase 1514 46.97 0 1803411..1803740 - 109 157374655 - Ssed_1516 - small multidrug resistance protein 1515 51.34 +1 1804267..1806015 + 582 157374656 - Ssed_1517 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit 1516 47.15 0 1806057..1807214 - 385 157374657 - Ssed_1518 - transcriptional regulator, CdaR 1517 46.11 0 1807414..1808133 - 239 157374658 - Ssed_1519 - hypothetical protein 1518 43.11 0 1808366..1809337 - 323 157374659 - Ssed_1520 - GGDEF domain-containing protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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