version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1375 46.98 0 1636884..1637909 - 341 157374516 - Ssed_1377 - esterase/lipase-like protein 1376 45.58 0 1638415..1639092 + 225 157374517 - Ssed_1378 - hypothetical protein 1377 45.24 0 1639214..1639507 + 97 157374518 - Ssed_1379 - hypothetical protein 1378 43.46 0 1639581..1640153 + 190 157374519 - Ssed_1380 - methylation site containing protein 1379 45.79 0 1640500..1644906 + 1468 157374520 - Ssed_1381 - Signal transduction histidine kinase-like protein 1380 46.86 0 1644899..1645807 + 302 157374521 - Ssed_1382 - response regulator receiver protein 1381 45.77 0 1645918..1647147 + 409 157374522 - Ssed_1383 - response regulator 1382 48.45 0 1647155..1648153 - 332 157374523 - Ssed_1384 - hypothetical protein 1383 46.54 0 1648311..1648772 - 153 157374524 - Ssed_1385 - hypothetical protein 1384 49.41 0 1649064..1649486 + 140 157374525 - Ssed_1386 - OsmC family protein 1385 46.51 0 1649570..1649956 + 128 157374526 - Ssed_1387 - hypothetical protein 1386 45.83 0 1650208..1650735 + 175 157374527 - Ssed_1388 - methylation site containing protein 1387 47.85 0 1650888..1651445 - 185 157374528 - Ssed_1389 - hypothetical protein 1388 50.82 +1 1651894..1652442 + 182 157374529 - Ssed_1390 - cation antiporter 1389 51.42 +1 1652429..1653412 + 327 157374530 - Ssed_1391 - universal stress protein, UspA 1390 55.56 +2 1653419..1653697 + 92 157374531 - Ssed_1392 - multiple resistance and pH regulation protein F 1391 56.00 +2 1653684..1653983 + 99 157374532 - Ssed_1393 - putative monovalent cation/H+ antiporter subunit G 1392 54.32 +2 1653971..1654294 + 107 157374533 - Ssed_1394 - hypothetical protein 1393 54.95 +2 1654408..1655064 + 218 157374534 - Ssed_1395 - hypothetical protein 1394 52.43 +1 1655061..1655369 + 102 157374535 - Ssed_1396 - NADH-ubiquinone oxidoreductase, chain 4L 1395 54.85 +2 1655341..1656846 + 501 157374536 - Ssed_1397 - NADH dehydrogenase (quinone) 1396 53.51 +1 1656843..1658339 + 498 157374537 - Ssed_1398 - NADH dehydrogenase (quinone) 1397 53.73 +1 1658336..1659649 + 437 157374538 - Ssed_1399 - formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter MnhD subunit-like protein 1398 42.24 -1 1659906..1660253 + 115 157374539 - Ssed_1400 - hypothetical protein 1399 37.31 -2 1660789..1661718 - 309 157374540 - Ssed_1401 - AraC-type DNA-binding domain-containing protein 1400 50.79 +1 1662030..1662980 + 316 157374541 - Ssed_1402 - cytochrome c family protein 1401 50.87 +1 1662995..1665001 + 668 157374542 - Ssed_1403 - outer membrane protein 1402 52.72 +1 1665016..1667388 + 790 157374543 - Ssed_1404 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 1403 50.81 +1 1667412..1668029 + 205 157374544 - Ssed_1405 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1404 51.53 +1 1668099..1668719 + 206 157374545 - Ssed_1406 - cytoplasmic chaperone TorD family protein 1405 43.23 0 1669480..1669974 - 164 157374546 - Ssed_1407 - SsrA-binding protein 1406 44.91 0 1670199..1670630 + 143 157374547 - Ssed_1408 - cyclase/dehydrase 1407 42.64 -1 1670980..1671312 + 110 157374548 - Ssed_1409 - hypothetical protein 1408 46.90 0 1671422..1671937 - 171 157374549 - Ssed_1410 - SmpA/OmlA domain-containing protein 1409 52.59 +1 1672375..1673205 + 276 157374550 - Ssed_1411 - uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase 1410 39.73 -1 1673412..1673630 + 72 157374551 - Ssed_1412 - hypothetical protein 1411 46.83 0 1673704..1675467 + 587 157374552 - Ssed_1413 - diguanylate cyclase 1412 50.44 +1 1676315..1678033 + 572 157374553 - Ssed_1414 - malate synthase 1413 52.94 +1 1678176..1679501 + 441 157374554 - Ssed_1415 - isocitrate lyase 1414 48.25 0 1679881..1681362 + 493 157374555 - Ssed_1416 - putative signal transduction protein 1415 50.56 +1 1681426..1681959 - 177 157374556 - Ssed_1417 - hypothetical protein 1416 47.64 0 1682026..1682850 - 274 157374557 - Ssed_1418 - hypothetical protein 1417 44.10 0 1682958..1684703 - 581 157374558 - Ssed_1419 - diguanylate cyclase 1418 48.09 0 1684700..1686136 - 478 157374559 - Ssed_1420 - extracellular solute-binding protein 1419 46.22 0 1686440..1686889 - 149 157374560 - Ssed_1421 - CopG family transcriptional regulator 1420 46.24 0 1686849..1687592 - 247 157374561 - Ssed_1422 - hypothetical protein 1421 44.00 0 1688204..1688428 + 74 157374562 - Ssed_1423 - hypothetical protein 1422 44.22 0 1688573..1688875 + 100 157374563 - Ssed_1424 - NrfJ-related protein 1423 44.32 0 1689018..1689563 + 181 157374564 - Ssed_1425 - GCN5-related N-acetyltransferase 1424 46.44 0 1689639..1690088 - 149 157374565 - Ssed_1426 - hypothetical protein 1425 48.28 0 1690454..1692199 - 581 157374566 - Ssed_1427 - 5'-nucleotidase 1426 48.66 0 1692487..1693569 - 360 157374567 - Ssed_1428 - hypothetical protein 1427 45.37 0 1693728..1694849 + 373 157374568 - Ssed_1429 - hypothetical protein 1428 45.75 0 1694883..1695671 + 262 157374569 - Ssed_1430 - type IV pilus biogenesis/stability protein PilW 1429 48.87 0 1695671..1696603 + 310 157374570 - Ssed_1431 - hypothetical protein 1430 48.30 0 1696707..1697822 + 371 157374571 - Ssed_1432 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1431 46.82 0 1697982..1699256 + 424 157374572 - Ssed_1433 - histidine--tRNA ligase 1432 47.67 0 1699270..1699890 + 206 157374573 - Ssed_1434 - tetratricopeptide TPR_4 1433 48.06 0 1699902..1701089 + 395 157374574 - Ssed_1435 - outer membrane protein assembly complex subunit YfgL 1434 50.17 0 1701194..1702660 + 488 157374575 - Ssed_1436 - GTP-binding protein EngA 1435 44.59 0 1703214..1704386 + 390 157374576 - Ssed_1437 - MerR family transcriptional regulator 1436 42.84 -1 1705153..1706625 + 490 157374577 - Ssed_1438 - RNA-directed DNA polymerase 1437 54.03 +1 1706979..1707635 - 218 157374578 - Ssed_1439 - hexapaptide repeat-containing transferase 1438 50.55 +1 1707604..1708329 - 241 157374579 - Ssed_1440 - hypothetical protein 1439 48.44 0 1708390..1708773 - 127 157374580 - Ssed_1441 - putative lipoprotein 1440 49.77 0 1708896..1710215 - 439 157374581 - Ssed_1442 - hypothetical protein 1441 46.67 0 1710212..1713286 - 1024 157374582 - Ssed_1443 - amidohydrolase 1442 43.00 -1 1713446..1713838 - 130 157374583 - Ssed_1444 - histone family protein nucleoid-structuring protein H-NS 1443 46.13 0 1714159..1714908 + 249 157374584 - Ssed_1445 - electron transfer flavoprotein beta-subunit 1444 49.78 0 1714908..1715831 + 307 157374585 - Ssed_1446 - electron transfer flavoprotein, alpha subunit 1445 48.28 0 1716289..1717854 + 521 157374586 - Ssed_1447 - Na+/H+ antiporter NhaC 1446 48.50 0 1717995..1720163 - 722 157374587 - Ssed_1448 - peptidyl-dipeptidase Dcp 1447 46.46 0 1720444..1721022 + 192 157374588 - Ssed_1449 - thymidine kinase 1448 49.54 0 1721196..1721633 - 145 157374589 - Ssed_1450 - hypothetical protein 1449 45.42 0 1721765..1722343 - 192 157374590 - Ssed_1451 - methylation site containing protein 1450 49.32 0 1722727..1723383 - 218 157374591 - Ssed_1452 - 3-oxoacid CoA-transferase 1451 53.08 +1 1723400..1724113 - 237 157374592 - Ssed_1453 - 3-oxoacid CoA-transferase 1452 51.85 +1 1724127..1725017 - 296 157374593 - Ssed_1454 - pyruvate carboxyltransferase 1453 53.03 +1 1725019..1727094 - 691 157374594 - Ssed_1455 - carbamoyl-phosphate synthase L chain, ATP-binding 1454 50.24 0 1727096..1727935 - 279 157374595 - Ssed_1456 - enoyl-CoA hydratase/isomerase 1455 53.92 +1 1728064..1729671 - 535 157374596 - Ssed_1457 - propionyl-CoA carboxylase 1456 51.71 +1 1729740..1730909 - 389 157374597 - Ssed_1458 - acyl-CoA dehydrogenase domain-containing protein 1457 46.12 0 1730970..1731368 - 132 157374598 - Ssed_1459 - MerR family transcriptional regulator 1458 52.63 +1 1731907..1733823 + 638 157374599 - Ssed_1460 - AMP-dependent synthetase and ligase 1459 50.64 +1 1734400..1735953 + 517 157374600 - Ssed_1461 - 6-phosphogluconate dehydrogenase 1460 42.68 -1 1736017..1737429 - 470 157374601 - Ssed_1462 - HD-GYP domain-containing protein 1461 46.67 0 1737611..1738510 + 299 157374602 - Ssed_1463 - hypothetical protein 1462 50.86 +1 1738604..1739476 - 290 157374603 - Ssed_1464 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1463 48.70 0 1739898..1740821 + 307 157374604 - Ssed_1465 - short-chain dehydrogenase/reductase SDR 1464 48.33 0 1740909..1741775 + 288 157374605 - Ssed_1466 - palmitoyl-CoA hydrolase 1465 43.85 0 1741906..1742295 + 129 157374606 - Ssed_1467 - hypothetical protein 1466 47.47 0 1742405..1742998 + 197 157374607 - Ssed_1468 - hypothetical protein 1467 45.83 0 1743333..1743980 + 215 157374608 - Ssed_1469 - outer membrane protein W 1468 48.83 0 1744071..1744838 - 255 157374609 - Ssed_1470 - short-chain dehydrogenase/reductase SDR 1469 47.26 0 1745326..1745727 + 133 157374610 - Ssed_1471 - hypothetical protein 1470 46.14 0 1745811..1746755 + 314 157374611 - Ssed_1472 - homoserine O-succinyltransferase 1471 54.74 +2 1747063..1748253 + 396 157374612 - Ssed_1473 - Acetyl-CoA C-acetyltransferase 1472 51.39 +1 1748425..1749930 + 501 157374613 - Ssed_1474 - methylmalonate-semialdehyde dehydrogenase 1473 51.47 +1 1750148..1751305 + 385 157374614 - Ssed_1475 - butyryl-CoA dehydrogenase 1474 52.84 +1 1751447..1752220 + 257 157374615 - Ssed_1476 - enoyl-CoA hydratase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0