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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1274 45.76 0 1515812..1516294 + 160 157374415 - Ssed_1276 - riboflavin synthase 1275 42.96 -1 1516303..1516707 + 134 157374416 - Ssed_1277 - transcription antitermination protein NusB 1276 48.33 0 1516823..1517782 + 319 157374417 - Ssed_1278 - thiamine-phosphate kinase 1277 48.28 0 1517782..1518276 + 164 157374418 - Ssed_1279 - phosphatidylglycerophosphatase 1278 45.08 0 1518661..1519869 + 402 157374419 - Ssed_1280 - methylase involved in ubiquinone/menaquinone biosynthesis-like protein 1279 48.07 0 1519990..1521651 - 553 157374420 - Ssed_1281 - recombination and repair protein 1280 46.23 0 1521747..1522715 - 322 157374421 - Ssed_1282 - auxin efflux carrier 1281 42.86 -1 1522858..1523109 - 83 157374422 - Ssed_1283 - hypothetical protein 1282 41.91 -1 1523399..1524004 - 201 157374423 - Ssed_1284 - hypothetical protein 1283 44.81 0 1523979..1526792 - 937 157374424 - Ssed_1285 - hybrid sensory histidine kinase BarA 1284 44.92 0 1526890..1528218 + 442 157374425 - Ssed_1286 - 23S rRNA 5-methyluridine methyltransferase 1285 47.83 0 1528439..1530646 + 735 157374426 - Ssed_1287 - GTP diphosphokinase 1286 47.47 0 1530746..1531537 + 263 157374427 - Ssed_1288 - nucleoside triphosphate pyrophosphohydrolase 1287 44.63 0 1531660..1533297 + 545 157374428 - Ssed_1289 - CTP synthetase 1288 44.06 0 1533416..1534711 + 431 157374429 - Ssed_1290 - phosphopyruvate hydratase 1289 46.67 0 1534919..1535218 + 99 157374430 - Ssed_1291 - septum formation initiator 1290 48.37 0 1535266..1535970 + 234 157374431 - Ssed_1292 - 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 1291 47.74 0 1536056..1536541 + 161 157374432 - Ssed_1293 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1292 47.71 0 1536606..1537676 + 356 157374433 - Ssed_1294 - pseudouridylate synthase 1293 49.33 0 1537737..1538486 + 249 157374434 - Ssed_1295 - 3'-nucleotidase 1294 46.07 0 1538483..1539118 + 211 157374435 - Ssed_1296 - protein-L-isoaspartate(D-aspartate) O-methyltransferase 1295 42.30 -1 1539159..1540073 + 304 157374436 - Ssed_1297 - peptidase M23B 1296 43.11 0 1540150..1541121 + 323 157374437 - Ssed_1298 - RpoD family RNA polymerase sigma factor 1297 48.76 0 1541354..1543933 - 859 157374438 - Ssed_1299 - DNA mismatch repair protein 1298 48.68 0 1544274..1545335 + 353 157374439 - Ssed_1300 - recombinase A 1299 43.10 0 1545549..1546142 - 197 157374440 - Ssed_1301 - transposase IS116/IS110/IS902 family protein 1300 34.00 -2 1546512..1546964 - 150 157374441 - Ssed_1302 - hypothetical protein 1301 39.22 -2 1547418..1547723 - 101 157374442 - Ssed_1303 - hypothetical protein 1302 38.76 -2 1547738..1548124 - 128 157374443 - Ssed_1304 - NIPSNAP family protein 1303 46.52 0 1548674..1549606 + 310 157374444 - Ssed_1305 - cytochrome c family protein 1304 48.69 0 1549618..1551636 + 672 157374445 - Ssed_1306 - outer membrane protein 1305 43.86 0 1551660..1554149 + 829 157374446 - Ssed_1307 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 1306 44.65 0 1554164..1554799 + 211 157374447 - Ssed_1308 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1307 40.16 -1 1554850..1555464 + 204 157374448 - Ssed_1309 - cytoplasmic chaperone TorD family protein 1308 39.62 -1 1555464..1556195 + 243 157374449 - Ssed_1310 - uncharacterized endonuclease III related protein 1309 36.68 -2 1556294..1557100 - 268 157374450 - Ssed_1311 - transcriptional regulator-like protein 1310 38.67 -2 1557110..1557952 - 280 157374451 - Ssed_1312 - LysR family transcriptional regulator 1311 43.17 0 1558317..1559180 - 287 157374452 - Ssed_1313 - phosphatase 1312 41.50 -1 1559167..1560048 - 293 157374453 - Ssed_1314 - hypothetical protein 1313 39.08 -2 1560187..1560951 - 254 157374454 - Ssed_1315 - hypothetical protein 1314 37.79 -2 1562334..1563545 - 403 157374455 - Ssed_1316 - major facilitator superfamily permease 1315 40.62 -1 1563679..1564584 + 301 157374456 - Ssed_1317 - LysR family transcriptional regulator 1316 48.99 0 1565532..1568156 + 874 157374457 - Ssed_1318 - alanine--tRNA ligase 1317 42.93 -1 1568610..1568807 + 65 157374458 - Ssed_1319 - carbon storage regulator, CsrA 1318 44.11 0 1571449..1571745 + 98 157374459 - Ssed_1320 - sodium pump decarboxylase, gamma subunit 1319 48.65 0 1571771..1573585 + 604 157374460 - Ssed_1321 - pyruvate carboxylase subunit B 1320 48.72 0 1573594..1574724 + 376 157374461 - Ssed_1322 - glutaconyl-CoA decarboxylase 1321 43.01 -1 1575172..1575357 + 61 157374462 - Ssed_1323 - hypothetical protein 1322 44.05 0 1575419..1575754 - 111 157374463 - Ssed_1324 - SecC motif-containing protein 1323 44.62 0 1575906..1576091 - 61 157374464 - Ssed_1325 - hypothetical protein 1324 48.83 0 1576280..1577563 - 427 157374465 - Ssed_1326 - sodium:dicarboxylate symporter 1325 46.81 0 1577852..1578274 + 140 157374466 - Ssed_1327 - hypothetical protein 1326 46.98 0 1578295..1581129 + 944 157374467 - Ssed_1328 - peptidase M16 domain-containing protein 1327 44.28 0 1581345..1582979 + 544 157374468 - Ssed_1329 - glutamate--cysteine ligase 1328 50.79 +1 1582976..1583416 + 146 157374469 - Ssed_1330 - hypothetical protein 1329 45.15 0 1583676..1584293 + 205 157374470 - Ssed_1331 - hypothetical protein 1330 46.49 0 1584409..1585647 - 412 157374471 - Ssed_1332 - GGDEF domain-containing protein 1331 52.16 +1 1586138..1586647 + 169 157374472 - Ssed_1333 - phosphoribosylaminoimidazole carboxylase 1332 49.28 0 1586714..1588438 - 574 157374473 - Ssed_1334 - putative sulfate transporter YchM 1333 47.64 0 1588923..1589537 + 204 157374474 - Ssed_1335 - ECF subfamily RNA polymerase sigma-24 factor 1334 50.07 0 1589527..1590249 + 240 157374475 - Ssed_1336 - hypothetical protein 1335 47.78 0 1590298..1590996 - 232 157374476 - Ssed_1337 - hypothetical protein 1336 45.28 0 1591027..1591503 - 158 157374477 - Ssed_1338 - hypothetical protein 1337 49.71 0 1591692..1594976 + 1094 157374478 - Ssed_1339 - peptidase S41 1338 45.95 0 1595219..1596106 + 295 157374479 - Ssed_1340 - hypothetical protein 1339 49.12 0 1596266..1596835 + 189 157374480 - Ssed_1341 - putative lipoprotein 1340 47.44 0 1597648..1598136 - 162 157374481 - Ssed_1342 - hypothetical protein 1341 49.12 0 1598277..1598618 - 113 157374482 - Ssed_1343 - hypothetical protein 1342 48.65 0 1598623..1600293 - 556 157374483 - Ssed_1344 - PepSY-associated TM helix domain-containing protein 1343 48.00 0 1600297..1600596 - 99 157374484 - Ssed_1345 - hypothetical protein 1344 43.42 0 1601225..1601581 + 118 157374485 - Ssed_1346 - sigma 54 modulation protein/ribosomal protein S30EA 1345 49.19 0 1601711..1603633 - 640 157374486 - Ssed_1347 - glutathione-regulated potassium-efflux system protein KefC 1346 48.38 0 1603661..1604278 - 205 157374487 - Ssed_1348 - putative NAD(P)H oxidoreductase 1347 46.63 0 1604797..1605375 + 192 157374488 - Ssed_1349 - putative PhnA protein 1348 50.55 +1 1605517..1605969 + 150 157374489 - Ssed_1350 - hypothetical protein 1349 48.09 0 1606364..1607488 + 374 157374490 - Ssed_1351 - ribokinase-like domain-containing protein 1350 49.18 0 1607482..1608396 + 304 157374491 - Ssed_1352 - indigoidine synthase A family protein 1351 47.43 0 1608663..1609946 + 427 157374492 - Ssed_1353 - excitatory amino acid transporter 1352 49.59 0 1609996..1611102 - 368 157374493 - Ssed_1354 - GGDEF family protein 1353 47.07 0 1611453..1612682 + 409 157374494 - Ssed_1355 - sodium-glutamate symporter 1354 45.21 0 1612796..1613317 - 173 157374495 - Ssed_1356 - putative MutT/NUDIX family protein 1355 45.00 0 1613501..1614220 - 239 157374496 - Ssed_1357 - hypothetical protein 1356 39.76 -1 1614497..1614823 - 108 157374497 - Ssed_1358 - hypothetical protein 1357 37.08 -2 1615041..1615280 - 79 157374498 - Ssed_1359 - hypothetical protein 1358 48.73 0 1615537..1616283 + 248 157374499 - Ssed_1360 - hypothetical protein 1359 43.89 0 1616472..1616651 + 59 157374500 - Ssed_1361 - hypothetical protein 1360 50.53 +1 1617225..1617881 - 218 157374501 - Ssed_1362 - anti-ECFsigma factor, ChrR 1361 48.23 0 1617941..1618732 - 263 157374502 - Ssed_1363 - short chain dehydrogenase/reductase family oxidoreductase 1362 43.97 0 1618971..1619252 + 93 157374503 - Ssed_1364 - hypothetical protein 1363 44.88 0 1619348..1619650 + 100 157374504 - Ssed_1365 - hypothetical protein 1364 48.28 0 1620046..1621035 + 329 157374505 - Ssed_1366 - diguanylate cyclase with PAS/PAC sensor 1365 47.45 0 1621320..1621907 - 195 157374506 - Ssed_1367 - putative lipoprotein 1366 48.27 0 1621933..1624074 - 713 157374507 - Ssed_1368 - hypothetical protein 1367 43.88 0 1624379..1625023 - 214 157374508 - Ssed_1369 - hypothetical protein 1368 49.49 0 1625251..1626531 + 426 157374509 - Ssed_1370 - hypothetical protein 1369 39.77 -1 1626985..1628103 + 372 157374510 - Ssed_1371 - hypothetical protein 1370 45.82 0 1628584..1629648 + 354 157374511 - Ssed_1372 - membrane-fusion protein-like protein 1371 49.59 0 1629652..1632789 + 1045 157374512 - Ssed_1373 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 1372 45.91 0 1633027..1634235 + 402 157374513 - Ssed_1374 - hypothetical protein 1373 47.30 0 1634524..1635318 + 264 157374514 - Ssed_1375 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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