IslandPath Analysis: Shewanella putrefaciens CN-32



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.78   STD DEV: 3.68
Shewanella putrefaciens CN-32, complete genome - 1..4659220
3972 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
819	 43.29	0	915260..916123	+	287	146291930	-	Sputcn32_0825	-	sterol desaturase family protein
820	 46.38	0	916272..916907	+	211	146291931	-	Sputcn32_0826	-	hypothetical protein
821	 45.66	0	917076..918470	+	464	146291932	-	Sputcn32_0827	-	UDP-N-acetylmuramate
822	 50.45	+1	918472..919131	+	219	146291933	-	Sputcn32_0828	-	aromatic acid decarboxylase
823	 44.44	0	919139..919669	+	176	146291934	-	Sputcn32_0829	-	hypoxanthine phosphoribosyltransferase
824	 43.98	0	919807..920745	+	312	146291935	-	Sputcn32_0830	-	ABC transporter related
825	 43.19	0	920742..921512	+	256	146291936	-	Sputcn32_0831	-	ABC-2 type transporter
826	 44.37	0	921581..925459	-	1292	146291937	-	Sputcn32_0832	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
827	 41.41	0	925659..926153	-	164	146291938	-	Sputcn32_0833	-	DNA-binding transcriptional regulator AsnC
828	 45.52	0	926216..926896	-	226	146291939	-	Sputcn32_0834	-	pseudouridylate synthase
829	 46.17	0	927099..929015	+	638	146291940	-	Sputcn32_0835	-	peptidase U32
830	 42.57	0	929084..931324	-	746	146291941	-	Sputcn32_0836	-	hypothetical protein
831	 45.28	0	931476..931793	+	105	146291942	-	Sputcn32_0837	-	cupin 2 domain-containing protein
832	 48.50	+1	931803..932969	-	388	146291943	-	Sputcn32_0838	-	peptidase M19, renal dipeptidase
833	 44.74	0	933088..933534	-	148	146291944	-	Sputcn32_0839	-	Fe-S metabolism associated SufE
834	 47.18	0	933609..934922	-	437	146291945	-	Sputcn32_0840	-	SufS subfamily cysteine desulfurase
835	 44.21	0	935404..936249	+	281	146291946	-	Sputcn32_0842	-	MltA-interacting MipA family protein
836	 46.15	0	936259..936648	+	129	146291947	-	Sputcn32_0843	-	hypothetical protein
837	 46.98	0	936650..937345	+	231	146291948	-	Sputcn32_0844	-	two component transcriptional regulator
838	 44.98	0	937351..938646	+	431	146291949	-	Sputcn32_0845	-	integral membrane sensor signal transduction histidine kinase
839	 44.88	0	938762..939220	-	152	146291950	-	Sputcn32_0846	-	hypothetical protein
840	 45.09	0	939242..940015	-	257	146291951	-	Sputcn32_0847	-	MltA-interacting MipA family protein
841	 47.36	0	940249..941289	-	346	146291952	-	Sputcn32_0848	-	aldo/keto reductase
842	 47.92	0	941744..943114	+	456	146291953	-	Sputcn32_0849	-	Na(+)-translocating NADH-quinone reductase subunit A
843	 46.80	0	943114..944346	+	410	146291954	-	Sputcn32_0850	-	Na(+)-translocating NADH-quinone reductase subunit B
844	 45.79	0	944336..945130	+	264	146291955	-	Sputcn32_0851	-	Na(+)-translocating NADH-quinone reductase subunit C
845	 43.96	0	945127..945747	+	206	146291956	-	Sputcn32_0852	-	Na(+)-translocating NADH-quinone reductase subunit D
846	 45.48	0	945757..946365	+	202	146291957	-	Sputcn32_0853	-	Na(+)-translocating NADH-quinone reductase subunit E
847	 45.73	0	946443..947660	+	405	146291958	-	Sputcn32_0854	-	Na(+)-translocating NADH-quinone reductase subunit F
848	 48.67	+1	947779..948117	-	112	146291959	-	Sputcn32_0855	-	ankyrin
849	 45.17	0	948535..949734	+	399	146291960	-	Sputcn32_0856	-	beta-lactamase
850	 29.45	-2	949872..950309	-	145	146291961	-	Sputcn32_0857	-	hypothetical protein
851	 46.11	0	950728..951690	-	320	146291962	-	Sputcn32_0858	-	MarR family transcriptional regulator
852	 45.23	0	951813..952367	-	184	146291963	-	Sputcn32_0859	-	NTPase
853	 47.37	0	952626..955190	+	854	146291964	-	Sputcn32_0860	-	peptidase S45, penicillin amidase
854	 44.06	0	955657..956952	+	431	146291965	-	Sputcn32_0861	-	aromatic amino acid permease
855	 43.02	0	957046..957489	-	147	146291966	-	Sputcn32_0862	-	GCN5-related N-acetyltransferase
856	 45.50	0	957829..959160	+	443	146291967	-	Sputcn32_0863	-	sodium:dicarboxylate symporter
857	 44.12	0	959260..959676	-	138	146291968	-	Sputcn32_0864	-	protein of unknown function DUF306, Meta and HslJ
858	 37.78	-1	959748..959972	+	74	146291969	-	Sputcn32_0865	-	hypothetical protein
859	 43.11	0	960057..960629	+	190	146291970	-	Sputcn32_0866	-	acetyltransferase
860	 42.45	0	960696..961046	+	116	146291971	-	Sputcn32_0867	-	hypothetical protein
861	 43.38	0	961201..962235	-	344	146291972	-	Sputcn32_0868	-	hypothetical protein
862	 34.52	-2	962609..963199	+	196	146291973	-	Sputcn32_0869	-	hypothetical protein
863	 42.80	0	964410..964895	-	161	146291974	-	Sputcn32_0870	-	hypothetical protein
864	 49.05	+1	965027..966178	-	383	146291975	-	Sputcn32_0871	-	S-adenosylmethionine synthetase
865	 49.57	+1	966657..968651	+	664	146291976	-	Sputcn32_0872	-	transketolase
866	 47.39	0	968768..969784	+	338	146291977	-	Sputcn32_0873	-	erythrose 4-phosphate dehydrogenase
867	 50.09	+1	969912..971087	+	391	146291978	pgk	Sputcn32_0874	-	phosphoglycerate kinase
868	 48.60	+1	971301..972368	+	355	146291979	-	Sputcn32_0875	-	fructose-1,6-bisphosphate aldolase
869	 41.60	0	972565..973302	+	245	146291980	-	Sputcn32_0876	-	hypothetical protein
870	 46.42	0	973516..974952	+	478	146291981	-	Sputcn32_0877	-	Na+/H+ antiporter
871	 44.82	0	975036..975566	-	176	146291982	-	Sputcn32_0878	-	hypothetical protein
872	 46.59	0	975577..976398	-	273	146291983	-	Sputcn32_0879	-	cytochrome c, putative
873	 45.56	0	976845..977588	+	247	146291984	-	Sputcn32_0880	-	transcriptional regulator, CadC
874	 39.92	-1	977581..978111	+	176	146291985	-	Sputcn32_0881	-	hypothetical protein
875	 42.17	0	978207..979610	+	467	146291986	-	Sputcn32_0882	-	hypothetical protein
876	 44.33	0	979591..981828	-	745	146291987	-	Sputcn32_0883	-	putative PAS/PAC sensor protein
877	 45.62	0	981997..982704	-	235	146291988	-	Sputcn32_0884	-	radical SAM domain-containing protein
878	 45.65	0	982880..986071	-	1063	146291989	-	Sputcn32_0885	-	acriflavin resistance protein
879	 44.97	0	986071..987282	-	403	146291990	-	Sputcn32_0886	-	RND family efflux transporter MFP subunit
880	 48.49	+1	987648..988907	-	419	146291991	-	Sputcn32_0887	-	ATP-dependent RNA helicase SrmB
881	 46.58	0	989021..989737	-	238	146291992	-	Sputcn32_0888	-	methyltransferase type 12
882	 45.51	0	990269..991672	+	467	146291993	-	Sputcn32_0889	-	branched-chain amino acid transport system II carrier protein
883	 47.40	0	991762..992664	+	300	146291994	-	Sputcn32_0890	-	tyrosine recombinase XerD
884	 44.49	0	992798..993523	+	241	146291995	-	Sputcn32_0891	-	thiol:disulfide interchange protein DsbC
885	 49.40	+1	993587..995341	+	584	146291996	-	Sputcn32_0892	-	single-stranded-DNA-specific exonuclease RecJ
886	 40.00	-1	995365..995694	+	109	146291997	-	Sputcn32_0893	-	hypothetical protein
887	 45.69	0	995730..996158	+	142	146291998	-	Sputcn32_0894	-	GCN5-related N-acetyltransferase
888	 50.06	+1	996227..997798	-	523	146291999	-	Sputcn32_0895	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
889	 45.61	0	997909..998478	-	189	146292000	-	Sputcn32_0896	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
890	 47.91	0	998854..1000410	-	518	146292001	-	Sputcn32_0897	-	leucyl aminopeptidase
891	 43.82	0	1000500..1001243	-	247	146292002	-	Sputcn32_0898	-	spermine synthase
892	 45.97	0	1001347..1001892	+	181	146292003	-	Sputcn32_0899	-	hypothetical protein
893	 32.66	-2	1001909..1002352	+	147	146292004	-	Sputcn32_0900	-	hypothetical protein
894	 37.66	-1	1002444..1002905	+	153	146292005	-	Sputcn32_0901	-	hypothetical protein
895	 39.58	-1	1003044..1003331	-	95	146292006	-	Sputcn32_0902	-	hypothetical protein
896	 50.27	+1	1003382..1004119	-	245	146292007	-	Sputcn32_0903	-	dienelactone hydrolase
897	 43.33	0	1004188..1005177	-	329	146292008	-	Sputcn32_0904	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
898	 46.66	0	1005433..1007226	-	597	146292009	-	Sputcn32_0905	-	flavocytochrome c
899	 42.82	0	1007724..1008134	+	136	146292010	-	Sputcn32_0906	-	hypothetical protein
900	 43.50	0	1008134..1008664	+	176	146292011	-	Sputcn32_0907	-	methyltransferase type 12
901	 45.36	0	1008725..1009015	+	96	146292012	-	Sputcn32_0908	-	hypothetical protein
902	 43.13	0	1009072..1010643	+	523	146292013	-	Sputcn32_0909	-	rhomboid family protein
903	 47.27	0	1010682..1011779	-	365	146292014	-	Sputcn32_0910	-	sodium/calcium exchanger membrane region
904	 38.05	-1	1012008..1012325	+	105	146292015	-	Sputcn32_0911	-	hypothetical protein
905	 44.41	0	1012474..1014216	-	580	146292016	-	Sputcn32_0912	-	hypothetical protein
906	 47.36	0	1014226..1016499	-	757	146292017	-	Sputcn32_0913	-	hypothetical protein
907	 43.60	0	1016700..1017254	-	184	146292018	-	Sputcn32_0914	-	hypothetical protein
908	 37.78	-1	1017493..1017762	+	89	146292019	-	Sputcn32_0915	-	hypothetical protein
909	 45.79	0	1017958..1019145	+	395	146292020	-	Sputcn32_0916	-	aromatic amino acid permease
910	 45.67	0	1019408..1021564	+	718	146292021	-	Sputcn32_0917	-	hypothetical protein
911	 41.67	0	1022344..1022547	-	67	146292022	-	Sputcn32_0918	-	hypothetical protein
912	 47.35	0	1023125..1023823	-	232	146292023	-	Sputcn32_0919	-	hypothetical protein
913	 40.91	-1	1024314..1024775	-	153	146292024	-	Sputcn32_0920	-	hypothetical protein
914	 43.14	0	1025306..1025560	-	84	146292025	-	Sputcn32_0921	-	hypothetical protein
915	 48.01	0	1025836..1026564	-	242	146292026	-	Sputcn32_0922	-	pseudouridine synthase
916	 42.49	0	1026573..1027271	-	232	146292027	-	Sputcn32_0923	-	hypothetical protein
917	 44.62	0	1027449..1028786	-	445	146292028	-	Sputcn32_0924	-	Na+/H+ antiporter NhaC
918	 43.14	0	1029132..1030763	-	543	146292029	-	Sputcn32_0925	-	methyl-accepting chemotaxis sensory transducer
44.78	MEAN

3.68	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.