IslandPathversion 1.0

IslandPath Analysis: Shewanella putrefaciens CN-32



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.78 STD DEV: 3.68
Shewanella putrefaciens CN-32, complete genome - 1..4659220
3972 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
408	 47.73	0	444209..445618	-	469	146291519	glnA	Sputcn32_0412	-	glutamine synthetase
409	 47.57	0	446653..448464	+	603	146291520	-	Sputcn32_0413	-	GTP-binding protein TypA
410	 45.24	0	448536..449576	-	346	146291521	-	Sputcn32_0414	-	diguanylate cyclase
411	 46.91	0	449985..452171	+	728	146291522	-	Sputcn32_0415	-	catalase/peroxidase HPI
412	 46.91	0	452242..453456	-	404	146291523	-	Sputcn32_0416	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
413	 47.75	0	453975..454196	-	73	146291524	-	Sputcn32_0417	-	hypothetical protein
414	 43.28	0	454278..455162	+	294	146291525	rbn	Sputcn32_0418	-	ribonuclease BN
415	 45.66	0	455234..455671	+	145	146291526	-	Sputcn32_0419	-	D-tyrosyl-tRNA deacylase
416	 47.33	0	455761..456210	+	149	146291527	-	Sputcn32_0420	-	thioesterase domain-containing protein
417	 44.14	0	456367..457587	+	406	146291528	-	Sputcn32_0421	-	peptidase S1 and S6, chymotrypsin/Hap
418	 41.01	-1	457599..458132	+	177	146291529	-	Sputcn32_0422	-	hypothetical protein
419	 45.39	0	458321..458917	+	198	146291530	-	Sputcn32_0423	-	azoreductase
420	 52.38	+2	459054..459620	-	188	146291531	-	Sputcn32_0424	-	XRE family transcriptional regulator
421	 52.02	+1	459784..460971	+	395	146291532	-	Sputcn32_0425	-	benzoate transporter
422	 47.80	0	461022..461498	-	158	146291533	-	Sputcn32_0426	-	GCN5-related N-acetyltransferase
423	 33.20	-2	461819..462571	+	250	146291534	-	Sputcn32_0427	-	hypothetical protein
424	 42.33	0	463101..463400	-	99	146291535	-	Sputcn32_0428	-	plasmid stabilization system protein
425	 43.21	0	463409..463651	-	80	146291536	-	Sputcn32_0429	-	prevent-host-death family protein
426	 40.73	-1	463931..464674	-	247	146291537	-	Sputcn32_0430	-	hypothetical protein
427	 52.86	+2	464706..465965	-	419	146291538	-	Sputcn32_0431	-	3-oxoacyl-(acyl carrier protein) synthase II
428	 52.34	+2	465966..466691	-	241	146291539	fabG	Sputcn32_0432	-	3-ketoacyl-(acyl-carrier-protein) reductase
429	 48.69	+1	466804..467337	-	177	146291540	-	Sputcn32_0433	-	thioester dehydrase family protein
430	 52.55	+2	467342..468559	-	405	146291541	-	Sputcn32_0434	-	3-oxoacyl-(acyl carrier protein) synthase I
431	 49.02	+1	468588..469352	-	254	146291542	-	Sputcn32_0435	-	hypothetical protein
432	 50.47	+1	469357..470646	-	429	146291543	-	Sputcn32_0436	-	FAD dependent oxidoreductase
433	 51.31	+1	470670..473111	-	813	146291544	-	Sputcn32_0437	-	hypothetical protein
434	 50.39	+1	473114..473881	-	255	146291545	-	Sputcn32_0438	-	hypothetical protein
435	 46.21	0	473878..474312	-	144	146291546	-	Sputcn32_0439	-	thioesterase superfamily protein
436	 52.32	+2	474309..475883	-	524	146291547	-	Sputcn32_0440	-	histidine ammonia-lyase
437	 50.16	+1	475880..477769	-	629	146291548	-	Sputcn32_0441	-	glycosyl transferase family protein
438	 49.03	+1	477763..478176	-	137	146291549	-	Sputcn32_0442	-	thioester dehydrase family protein
439	 49.89	+1	478169..479533	-	454	146291550	-	Sputcn32_0443	-	hypothetical protein
440	 48.09	0	479530..480078	-	182	146291551	-	Sputcn32_0444	-	hypothetical protein
441	 42.97	0	480078..480326	-	82	146291552	-	Sputcn32_0445	-	acyl carrier protein
442	 43.92	0	480336..480590	-	84	146291553	-	Sputcn32_0446	-	acyl carrier protein, putative
443	 50.11	+1	480574..481449	-	291	146291554	-	Sputcn32_0447	-	phospholipid/glycerol acyltransferase
444	 50.67	+1	481442..482185	-	247	146291555	-	Sputcn32_0448	-	hypothetical protein
445	 41.33	0	482525..483424	-	299	146291556	-	Sputcn32_0449	-	hypothetical protein
446	 51.65	+1	483607..485697	-	696	146291557	-	Sputcn32_0450	-	ATP-dependent DNA helicase RecG
447	 44.68	0	485930..486643	+	237	146291558	-	Sputcn32_0451	-	multiple drug resistance protein MarC
448	 46.20	0	486761..488206	-	481	146291559	-	Sputcn32_0452	-	OmpA/MotB domain-containing protein
449	 34.18	-2	488359..488712	+	117	146291560	-	Sputcn32_0453	-	hypothetical protein
450	 43.98	0	489267..489623	+	118	146291561	-	Sputcn32_0454	-	hypothetical protein
451	 51.39	+1	489949..490812	-	287	146291562	-	Sputcn32_0455	-	hypothetical protein
452	 48.60	+1	491350..492063	+	237	146291563	-	Sputcn32_0456	-	ribonuclease PH
453	 49.22	+1	492231..492872	+	213	146291564	pyrE	Sputcn32_0457	-	orotate phosphoribosyltransferase
454	 44.96	0	492931..493575	-	214	146291565	folE	Sputcn32_0458	-	GTP cyclohydrolase I
455	 43.77	0	493799..494392	-	197	146291566	slmA	Sputcn32_0459	-	nucleoid occlusion protein
456	 46.84	0	494425..494883	-	152	146291567	dut	Sputcn32_0460	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
457	 50.20	+1	494880..496100	-	406	146291568	-	Sputcn32_0461	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
458	 45.58	0	496223..496900	+	225	146291569	-	Sputcn32_0462	-	DNA repair protein RadC
459	 43.88	0	497022..497258	+	78	146291570	-	Sputcn32_0463	-	ribosomal protein L28
460	 35.06	-2	497265..497438	+	57	146291571	rpmG	Sputcn32_0464	-	50S ribosomal protein L33
461	 47.95	0	497762..499081	+	439	146291572	-	Sputcn32_0465	-	N-acetylglutamate synthase
462	 42.20	0	499197..499715	+	172	146291573	-	Sputcn32_0466	-	hypothetical protein
463	 46.89	0	499762..500646	-	294	146291574	-	Sputcn32_0467	-	transporter DMT superfamily protein
464	 48.82	+1	500839..501303	-	154	146291575	-	Sputcn32_0468	-	hypothetical protein
465	 48.85	+1	501600..503423	+	607	146291576	-	Sputcn32_0469	-	ATP-dependent DNA helicase RecQ
466	 41.60	0	503405..505183	-	592	146291577	-	Sputcn32_0470	-	tetratricopeptide domain-containing protein
467	 48.18	0	505691..507259	+	522	146291578	-	Sputcn32_0471	-	2-isopropylmalate synthase
468	 50.14	+1	507330..508424	+	364	146291579	-	Sputcn32_0472	-	3-isopropylmalate dehydrogenase
469	 51.72	+1	508424..509848	+	474	146291580	-	Sputcn32_0473	-	isopropylmalate isomerase large subunit
470	 49.67	+1	509876..510481	+	201	146291581	-	Sputcn32_0474	-	isopropylmalate isomerase small subunit
471	 48.16	0	511001..512356	+	451	146291582	-	Sputcn32_0475	-	membrane protein involved in aromatic hydrocarbon degradation
472	 50.03	+1	512536..514020	+	494	146291583	-	Sputcn32_0476	-	glycerol kinase
473	 44.85	0	514127..514456	-	109	146291584	-	Sputcn32_0477	-	hypothetical protein
474	 45.32	0	514915..515373	+	152	146291585	-	Sputcn32_0478	-	cell division protein MraZ
475	 46.82	0	515405..516346	+	313	146291586	mraW	Sputcn32_0479	-	S-adenosyl-methyltransferase MraW
476	 45.08	0	516357..516671	+	104	146291587	-	Sputcn32_0480	-	cell division protein FtsL
477	 47.43	0	516685..518436	+	583	146291588	-	Sputcn32_0481	-	peptidoglycan glycosyltransferase
478	 49.43	+1	518433..519935	+	500	146291589	-	Sputcn32_0482	-	UDP-N-acetylmuramyl-tripeptide synthetase
479	 47.87	0	519932..521314	+	460	146291590	-	Sputcn32_0483	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
480	 44.23	0	521315..522397	+	360	146291591	-	Sputcn32_0484	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
481	 49.70	+1	522404..523723	+	439	146291592	-	Sputcn32_0485	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
482	 46.45	0	523713..524924	+	403	146291593	-	Sputcn32_0486	-	cell division protein FtsW
483	 48.85	+1	524924..526012	+	362	146291594	-	Sputcn32_0487	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
484	 48.67	+1	526015..527481	+	488	146291595	-	Sputcn32_0488	-	UDP-N-acetylmuramate--alanine ligase
485	 44.40	0	527633..528382	+	249	146291596	-	Sputcn32_0489	-	polypeptide-transport-associated domain-containing protein
486	 49.76	+1	528363..529598	+	411	146291597	-	Sputcn32_0490	-	cell division protein FtsA
487	 50.00	+1	529632..530819	+	395	146291598	-	Sputcn32_0491	-	cell division protein FtsZ
488	 44.63	0	531000..531920	+	306	146291599	lpxC	Sputcn32_0492	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
489	 45.86	0	531932..532378	-	148	146291600	-	Sputcn32_0493	-	hypothetical protein
490	 44.44	0	532406..533305	+	299	146291601	-	Sputcn32_0494	-	peptidase M23B
491	 44.87	0	533366..536095	+	909	146291602	-	Sputcn32_0495	-	preprotein translocase subunit SecA
492	 48.26	0	542884..543285	-	133	146291603	-	Sputcn32_0496	-	hypothetical protein
493	 47.12	0	543297..544304	-	335	146291604	-	Sputcn32_0497	-	delta-aminolevulinic acid dehydratase
494	 41.28	0	544314..546188	-	624	146291605	-	Sputcn32_0498	-	diguanylate cyclase
495	 45.40	0	546181..546984	-	267	146291606	-	Sputcn32_0499	-	TatD-related deoxyribonuclease
496	 42.61	0	546984..547511	-	175	146291607	-	Sputcn32_0500	-	hypothetical protein
497	 42.80	0	547558..548307	-	249	146291608	-	Sputcn32_0501	-	Sec-independent protein translocase, TatC subunit
498	 49.27	+1	548311..548787	-	158	146291609	-	Sputcn32_0502	-	twin-arginine translocation protein, TatB subunit
499	 40.00	-1	548795..549034	-	79	146291610	-	Sputcn32_0503	-	twin arginine-targeting protein translocase
500	 43.64	0	549094..550743	-	549	146291611	-	Sputcn32_0504	-	2-polyprenylphenol 6-hydroxylase
501	 44.12	0	550740..551360	-	206	146291612	-	Sputcn32_0505	-	hypothetical protein
502	 45.50	0	551360..552115	-	251	146291613	-	Sputcn32_0506	-	ubiquinone/menaquinone biosynthesis methyltransferase
503	 48.92	+1	552360..553424	-	354	146291614	-	Sputcn32_0507	-	arginase/agmatinase/formiminoglutamase
504	 45.47	0	553552..554037	-	161	146291615	-	Sputcn32_0508	-	ribonuclease activity regulator protein RraA
505	 38.04	-1	554356..554610	+	84	146291616	-	Sputcn32_0509	-	hypothetical protein
506	 45.81	0	554971..555483	+	170	146291617	-	Sputcn32_0510	-	phosphoesterase, PA-phosphatase related
507	 46.11	0	555557..556597	+	346	146291618	-	Sputcn32_0511	-	hypothetical protein
44.78	MEAN

3.68	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.