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Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3827 40.51 -1 4477746..4478135 + 129 146294938 - Sputcn32_3857 - hypothetical protein 3828 50.00 +1 4478325..4479368 + 347 146294939 - Sputcn32_3858 - ubiquinol oxidase, subunit II 3829 48.08 0 4479371..4481350 + 659 146294940 - Sputcn32_3859 - cytochrome-c oxidase 3830 48.15 0 4481352..4481972 + 206 146294941 - Sputcn32_3860 - cytochrome c oxidase, subunit III 3831 45.91 0 4481972..4482313 + 113 146294942 - Sputcn32_3861 - cytochrome C oxidase subunit IV 3832 48.63 +1 4482327..4483274 + 315 146294943 - Sputcn32_3862 - protoheme IX farnesyltransferase 3833 43.82 0 4483413..4485614 - 733 146294944 - Sputcn32_3863 - TonB-dependent siderophore receptor 3834 62.30 +2 4485824..4487221 - 465 146294945 - Sputcn32_3864 - amino acid permease-associated region 3835 66.11 +2 4487231..4488133 - 300 146294946 - Sputcn32_3865 - homocysteine S-methyltransferase 3836 47.39 0 4488502..4490031 - 509 146294947 - Sputcn32_3866 - XRE family transcriptional regulator 3837 46.10 0 4490285..4490848 + 187 146294948 - Sputcn32_3867 - malate synthase 3838 46.90 0 4491134..4492084 + 316 146294949 - Sputcn32_3868 - hypothetical protein 3839 50.33 +1 4492105..4492257 - 50 146294950 - Sputcn32_3869 - hypothetical protein 3840 46.15 0 4492500..4493123 - 207 146294951 - Sputcn32_3870 - paraquat-inducible protein A 3841 41.65 0 4493228..4494418 - 396 146294952 - Sputcn32_3871 - metal dependent phosphohydrolase 3842 45.66 0 4494683..4496029 - 448 146294953 - Sputcn32_3872 - ABC transporter related 3843 46.14 0 4496663..4498021 + 452 146294954 - Sputcn32_3873 - isochorismate synthase 3844 42.04 0 4498055..4498789 - 244 146294955 - Sputcn32_3874 - hypothetical protein 3845 44.24 0 4499030..4499689 + 219 146294956 - Sputcn32_3875 - hypothetical protein 3846 39.00 -1 4499789..4500247 + 152 146294957 - Sputcn32_3876 - acetyltransferase 3847 43.79 0 4500476..4502599 - 707 146294958 - Sputcn32_3877 - integral membrane sensor signal transduction histidine kinase 3848 46.82 0 4502601..4504031 - 476 146294959 - Sputcn32_3878 - two component, sigma54 specific, Fis family transcriptional regulator 3849 43.27 0 4504270..4505094 + 274 146294960 - Sputcn32_3879 - extracellular solute-binding protein 3850 50.85 +1 4505091..4505798 + 235 146294961 - Sputcn32_3880 - binding-protein-dependent transport systems inner membrane component 3851 43.74 0 4505802..4506512 + 236 146294962 - Sputcn32_3881 - ABC transporter related 3852 46.60 0 4506496..4507083 + 195 146294963 - Sputcn32_3882 - molybdopterin-guanine dinucleotide biosynthesis protein A 3853 47.72 0 4507117..4508916 + 599 146294964 - Sputcn32_3883 - molybdopterin-guanine dinucleotide biosynthesis protein B 3854 45.63 0 4508933..4509916 + 327 146294965 - Sputcn32_3884 - molybdenum cofactor biosynthesis protein A 3855 40.65 -1 4510003..4510467 + 154 146294966 - Sputcn32_3885 - hypothetical protein 3856 45.83 0 4510500..4511315 + 271 146294967 - Sputcn32_3886 - formamidopyrimidine-DNA glycosylase 3857 44.85 0 4511376..4512851 - 491 146294968 - Sputcn32_3887 - hypothetical protein 3858 42.89 0 4512942..4513433 - 163 146294969 coaD Sputcn32_3888 - phosphopantetheine adenylyltransferase 3859 40.83 -1 4513814..4515655 + 613 146294970 - Sputcn32_3889 - sulfatase 3860 42.67 0 4515722..4516267 - 181 146294971 - Sputcn32_3890 - dTDP-4-dehydrorhamnose 3,5-epimerase 3861 43.28 0 4516313..4517197 - 294 146294972 - Sputcn32_3891 - dTDP-4-dehydrorhamnose reductase 3862 41.67 0 4517310..4518077 - 255 146294973 - Sputcn32_3892 - glycosyl transferase family protein 3863 42.21 0 4518116..4519174 - 352 146294974 - Sputcn32_3893 - CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 3864 33.08 -2 4519488..4520663 + 391 146294975 - Sputcn32_3894 - UDP-galactopyranose mutase 3865 31.96 -2 4520665..4521465 + 266 146294976 - Sputcn32_3895 - hypothetical protein 3866 34.32 -2 4521531..4522241 - 236 146294977 - Sputcn32_3896 - glycosyl transferase family protein 3867 46.07 0 4522312..4523355 - 347 146294978 - Sputcn32_3897 - glycosyl transferase family protein 3868 43.44 0 4523454..4524215 + 253 146294979 - Sputcn32_3898 - 3-deoxy-D-manno-octulosonic-acid kinase 3869 48.66 +1 4524256..4525521 - 421 146294980 - Sputcn32_3899 - 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 3870 43.06 0 4525721..4526368 + 215 146294981 - Sputcn32_3900 - TetR family transcriptional regulator 3871 50.50 +1 4526664..4527857 + 397 146294982 - Sputcn32_3901 - 2-amino-3-ketobutyrate coenzyme A ligase 3872 47.76 0 4527869..4528894 + 341 146294983 tdh Sputcn32_3902 - L-threonine 3-dehydrogenase 3873 43.55 0 4528932..4529303 + 123 146294984 - Sputcn32_3903 - rhodanese domain-containing protein 3874 46.81 0 4529300..4530145 + 281 146294985 - Sputcn32_3904 - rhomboid family protein 3875 45.97 0 4530238..4530894 - 218 146294986 - Sputcn32_3905 - isoprenoid biosynthesis protein 3876 47.02 0 4531281..4534049 + 922 146294987 - Sputcn32_3906 - DNA polymerase I 3877 44.09 0 4534861..4535520 - 219 146294988 - Sputcn32_3907 - GTPase EngB 3878 43.59 0 4535690..4536313 + 207 146294989 - Sputcn32_3908 - cytochrome c, class I 3879 34.57 -2 4536472..4536714 - 80 146294990 - Sputcn32_3909 - hypothetical protein 3880 40.53 -1 4537132..4537770 + 212 146294991 - Sputcn32_3910 - hypothetical protein 3881 42.75 0 4537861..4538412 + 183 146294992 - Sputcn32_3911 - hypothetical protein 3882 43.16 0 4538482..4538949 + 155 146294993 - Sputcn32_3912 - hypothetical protein 3883 43.40 0 4539234..4540574 + 446 146294994 - Sputcn32_3913 - coproporphyrinogen III oxidase 3884 46.79 0 4540659..4541654 - 331 146294995 - Sputcn32_3914 - adenosine deaminase 3885 45.92 0 4541865..4543676 + 603 146294996 - Sputcn32_3915 - hypothetical protein 3886 45.43 0 4543772..4544755 + 327 146294997 - Sputcn32_3916 - alpha/beta hydrolase fold 3887 40.55 -1 4544712..4547162 - 816 146294998 - Sputcn32_3917 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3888 43.49 0 4553122..4554549 - 475 146294999 - Sputcn32_3918 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3889 40.17 -1 4554641..4554991 + 116 146295000 - Sputcn32_3919 - hypothetical protein 3890 47.62 0 4555110..4556012 + 300 146295001 - Sputcn32_3920 - naphthoate synthase 3891 46.08 0 4556196..4556399 + 67 146295002 - Sputcn32_3921 - hypothetical protein 3892 42.92 0 4556700..4560485 - 1261 146295003 - Sputcn32_3922 - superfamily I DNA/RNA helicase 3893 45.96 0 4560533..4560817 + 94 146295004 - Sputcn32_3923 - transposase IS3/IS911 family protein 3894 50.12 +1 4560868..4561683 + 271 146295005 - Sputcn32_3924 - integrase catalytic subunit 3895 42.03 0 4561646..4562197 - 183 146295006 - Sputcn32_3925 - hypothetical protein 3896 42.87 0 4562360..4563397 - 345 146295007 - Sputcn32_3926 - putative DNA modification methylase 3897 38.02 -1 4563564..4563926 + 120 146295008 - Sputcn32_3927 - helix-turn-helix domain-containing protein 3898 41.94 0 4564275..4564994 - 239 146295009 - Sputcn32_3928 - hypothetical protein 3899 40.97 -1 4564981..4565766 - 261 146295010 - Sputcn32_3929 - hypothetical protein 3900 45.17 0 4566423..4567994 - 523 146295011 - Sputcn32_3930 - transposition regulatory protein 3901 46.03 0 4568042..4569553 - 503 146295012 - Sputcn32_3931 - transposition protein 3902 41.91 0 4569771..4570073 - 100 146295013 - Sputcn32_3932 - hypothetical protein 3903 37.98 -1 4570180..4570566 + 128 146295014 - Sputcn32_3933 - hypothetical protein 3904 46.19 0 4570690..4572330 - 546 146295015 - Sputcn32_3934 - AAA ATPase 3905 47.56 0 4572327..4574420 - 697 146295016 - Sputcn32_3935 - putative transposase 3906 42.82 0 4575639..4576766 + 375 146295017 - Sputcn32_3937 - hypothetical protein 3907 42.44 0 4576732..4578279 + 515 146295018 - Sputcn32_3938 - hypothetical protein 3908 38.54 -1 4578385..4580286 + 633 146295019 - Sputcn32_3939 - DNA methylase N-4/N-6 domain-containing protein 3909 48.70 +1 4580323..4581363 - 346 146295020 - Sputcn32_3940 - integrase catalytic subunit 3910 38.20 -1 4581480..4582835 - 451 146295021 - Sputcn32_3941 - hypothetical protein 3911 39.80 -1 4582838..4585003 - 721 146295022 - Sputcn32_3942 - hypothetical protein 3912 44.01 0 4585157..4586776 - 539 146295023 - Sputcn32_3943 - hypothetical protein 3913 46.71 0 4586776..4588293 - 505 146295024 - Sputcn32_3944 - transposon Tn7 transposition protein TnsD 3914 45.50 0 4588296..4589906 - 536 146295025 - Sputcn32_3945 - transposon Tn7 transposition protein TnsC 3915 47.06 0 4589899..4591989 - 696 146295026 - Sputcn32_3946 - integrase catalytic subunit 3916 47.22 0 4591976..4592803 - 275 146295027 - Sputcn32_3947 - transposon Tn7 transposition protein TnsA 3917 40.82 -1 4593046..4594074 - 342 146295028 - Sputcn32_3948 - hypothetical protein 3918 44.07 0 4594221..4594490 - 89 146295029 - Sputcn32_3949 - hypothetical protein 3919 39.13 -1 4594624..4595934 - 436 146295030 - Sputcn32_3950 - hypothetical protein 3920 47.16 0 4596272..4598101 - 609 146295031 - Sputcn32_3951 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing 3921 49.03 +1 4598146..4598916 - 256 146295032 - Sputcn32_3952 - DeoR family transcriptional regulator 3922 42.59 0 4599117..4601222 - 701 146295033 - Sputcn32_3953 - TonB-dependent siderophore receptor 3923 45.20 0 4601499..4602863 - 454 146295034 - Sputcn32_3954 - UDP-N-acetylglucosamine pyrophosphorylase 3924 44.99 0 4603061..4603489 - 142 146295035 - Sputcn32_3955 - F0F1 ATP synthase subunit epsilon 3925 45.91 0 4603524..4604915 - 463 146295036 - Sputcn32_3956 - F0F1 ATP synthase subunit beta 3926 46.34 0 4604951..4605811 - 286 146295037 - Sputcn32_3957 - F0F1 ATP synthase subunit gamma 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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