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Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3661 48.02 0 4299299..4299802 - 167 146294772 - Sputcn32_3689 - putative orphan protein 3662 50.31 +1 4299812..4300135 - 107 146294773 - Sputcn32_3690 - hypothetical protein 3663 47.81 0 4300925..4301767 - 280 146294774 - Sputcn32_3691 - uroporphyrin-III C/tetrapyrrole methyltransferase 3664 47.06 0 4301856..4303706 + 616 146294775 - Sputcn32_3692 - LppC family lipoprotein 3665 46.79 0 4303703..4304029 + 108 146294776 - Sputcn32_3693 - hypothetical protein 3666 47.98 0 4304122..4304715 + 197 146294777 - Sputcn32_3694 - phosphoheptose isomerase 3667 44.62 0 4304712..4305278 + 188 146294778 - Sputcn32_3695 - transport-associated 3668 44.05 0 4305299..4306222 - 307 146294779 - Sputcn32_3696 - hypothetical protein 3669 46.05 0 4306342..4307214 + 290 146294780 - Sputcn32_3697 - LysR family transcriptional regulator 3670 48.35 0 4307284..4308282 - 332 146294781 - Sputcn32_3698 - tryptophanyl-tRNA synthetase 3671 46.40 0 4308327..4309007 - 226 146294782 - Sputcn32_3699 - phosphoglycolate phosphatase 3672 46.98 0 4309012..4309722 - 236 146294783 - Sputcn32_3700 - ribulose-phosphate 3-epimerase 3673 41.80 0 4309952..4310317 + 121 146294784 - Sputcn32_3701 - hypothetical protein 3674 38.71 -1 4310317..4310502 + 61 146294785 - Sputcn32_3702 - hypothetical protein 3675 41.55 0 4310520..4311359 - 279 146294786 - Sputcn32_3703 - DNA adenine methylase 3676 45.19 0 4311408..4312799 - 463 146294787 - Sputcn32_3704 - sporulation domain-containing protein 3677 43.70 0 4312818..4313897 - 359 146294788 - Sputcn32_3705 - 3-dehydroquinate synthase 3678 45.35 0 4313903..4314418 - 171 146294789 - Sputcn32_3706 - shikimate kinase I 3679 38.65 -1 4314635..4316686 - 683 146294790 - Sputcn32_3707 - type IV pilus secretin PilQ 3680 40.66 -1 4316708..4317226 - 172 146294791 - Sputcn32_3708 - pilus assembly protein, PilQ 3681 37.00 -2 4317223..4317849 - 208 146294792 - Sputcn32_3709 - pilus assembly protein, PilO 3682 41.37 0 4317846..4318430 - 194 146294793 - Sputcn32_3710 - fimbrial assembly family protein 3683 41.85 0 4318418..4319497 - 359 146294794 - Sputcn32_3711 - type IV pilus assembly protein PilM 3684 44.68 0 4319686..4322205 + 839 146294795 - Sputcn32_3712 - 1A family penicillin-binding protein 3685 48.10 0 4322287..4323654 - 455 146294796 - Sputcn32_3713 - argininosuccinate lyase 3686 49.35 +1 4323747..4324970 - 407 146294797 - Sputcn32_3714 - argininosuccinate synthase 3687 46.80 0 4325030..4325935 - 301 146294798 - Sputcn32_3715 - ornithine carbamoyltransferase 3688 50.32 +1 4325948..4326730 - 260 146294799 - Sputcn32_3716 - acetylglutamate kinase 3689 46.44 0 4326762..4327814 - 350 146294800 argC Sputcn32_3717 - N-acetyl-gamma-glutamyl-phosphate reductase 3690 49.48 +1 4328365..4331034 + 889 146294801 - Sputcn32_3718 - phosphoenolpyruvate carboxylase 3691 45.05 0 4331034..4331579 + 181 146294802 - Sputcn32_3719 - hypothetical protein 3692 48.39 0 4331670..4332944 - 424 146294803 - Sputcn32_3720 - competence/damage-inducible protein CinA 3693 41.84 0 4338895..4339482 - 195 146294804 - Sputcn32_3721 - redoxin domain-containing protein 3694 40.42 -1 4339479..4339958 - 159 146294805 - Sputcn32_3722 - cytochrome C biogenesis protein 3695 41.08 -1 4339955..4340509 - 184 146294806 - Sputcn32_3723 - periplasmic protein thiol--disulphide oxidoreductase DsbE 3696 44.60 0 4340521..4342500 - 659 146294807 - Sputcn32_3724 - cytochrome c-type biogenesis protein CcmF 3697 42.63 0 4342897..4344144 + 415 146294808 - Sputcn32_3725 - TPR repeat-containing protein 3698 42.67 0 4344206..4344505 - 99 146294809 - Sputcn32_3726 - cytochrome c, class I 3699 40.71 -1 4344826..4345476 + 216 146294810 - Sputcn32_3727 - cytochrome c biogenesis protein CcmA 3700 44.10 0 4345488..4346174 + 228 146294811 - Sputcn32_3728 - heme exporter protein CcmB 3701 44.04 0 4346176..4346922 + 248 146294812 - Sputcn32_3729 - heme exporter protein CcmC 3702 41.79 0 4346922..4347122 + 66 146294813 - Sputcn32_3730 - Heme exporter protein D (CcmD) 3703 41.92 0 4347119..4347607 + 162 146294814 - Sputcn32_3731 - cytochrome c-type biogenesis protein CcmE 3704 50.00 +1 4348277..4348672 - 131 146294815 rplQ Sputcn32_3733 - 50S ribosomal protein L17 3705 48.18 0 4348713..4349702 - 329 146294816 - Sputcn32_3734 - DNA-directed RNA polymerase subunit alpha 3706 45.57 0 4349727..4350347 - 206 146294817 rpsD Sputcn32_3735 - 30S ribosomal protein S4 3707 47.84 0 4350380..4350772 - 130 146294818 - Sputcn32_3736 - 30S ribosomal protein S11 3708 46.78 0 4350788..4351144 - 118 146294819 rpsM Sputcn32_3737 - 30S ribosomal protein S13 3709 45.61 0 4351261..4351374 - 37 146294820 rpmJ Sputcn32_3738 - 50S ribosomal protein L36 3710 44.59 0 4351396..4352736 - 446 146294821 secY Sputcn32_3739 - preprotein translocase subunit SecY 3711 47.36 0 4352744..4353178 - 144 146294822 rplO Sputcn32_3740 - 50S ribosomal protein L15 3712 43.72 0 4353182..4353364 - 60 146294823 rpmD Sputcn32_3741 - 50S ribosomal protein L30 3713 47.22 0 4353371..4353874 - 167 146294824 rpsE Sputcn32_3742 - 30S ribosomal protein S5 3714 50.43 +1 4353887..4354237 - 116 146294825 rplR Sputcn32_3743 - 50S ribosomal protein L18 3715 47.57 0 4354248..4354781 - 177 146294826 rplF Sputcn32_3744 - 50S ribosomal protein L6 3716 47.33 0 4354792..4355184 - 130 146294827 rpsH Sputcn32_3745 - 30S ribosomal protein S8 3717 46.73 0 4355209..4355514 - 101 146294828 rpsN Sputcn32_3746 - 30S ribosomal protein S14 3718 45.00 0 4355525..4356064 - 179 146294829 rplE Sputcn32_3747 - 50S ribosomal protein L5 3719 41.90 0 4356077..4356391 - 104 146294830 rplX Sputcn32_3748 - 50S ribosomal protein L24 3720 47.43 0 4356403..4356771 - 122 146294831 rplN Sputcn32_3749 - 50S ribosomal protein L14 3721 41.37 0 4356950..4357198 - 82 146294832 - Sputcn32_3750 - ribosomal protein S17 3722 47.40 0 4357198..4357389 - 63 146294833 - Sputcn32_3751 - 50S ribosomal protein L29 3723 46.72 0 4357389..4357799 - 136 146294834 rplP Sputcn32_3752 - 50S ribosomal protein L16 3724 46.61 0 4357811..4358503 - 230 146294835 rpsC Sputcn32_3753 - 30S ribosomal protein S3 3725 48.65 +1 4358513..4358845 - 110 146294836 rplV Sputcn32_3754 - 50S ribosomal protein L22 3726 46.59 0 4358861..4359139 - 92 146294837 rpsS Sputcn32_3755 - 30S ribosomal protein S19 3727 49.09 +1 4359154..4359978 - 274 146294838 rplB Sputcn32_3756 - 50S ribosomal protein L2 3728 45.75 0 4359995..4360300 - 101 146294839 rplW Sputcn32_3757 - 50S ribosomal protein L23 3729 47.36 0 4360297..4360902 - 201 146294840 rplD Sputcn32_3758 - 50S ribosomal protein L4 3730 46.48 0 4360920..4361558 - 212 146294841 rplC Sputcn32_3759 - 50S ribosomal protein L3 3731 44.87 0 4361586..4361897 - 103 146294842 rpsJ Sputcn32_3760 - 30S ribosomal protein S10 3732 48.27 0 4362232..4363416 - 394 146294843 - Sputcn32_3761 - elongation factor Tu 3733 45.78 0 4363489..4365585 - 698 146294844 - Sputcn32_3762 - elongation factor G 3734 46.07 0 4365664..4366134 - 156 146294845 - Sputcn32_3763 - 30S ribosomal protein S7 3735 50.13 +1 4366215..4366589 - 124 146294846 rpsL Sputcn32_3764 - 30S ribosomal protein S12 3736 47.84 0 4366769..4370986 - 1405 146294847 - Sputcn32_3765 - DNA-directed RNA polymerase subunit beta' 3737 46.53 0 4371070..4375101 - 1343 146294848 - Sputcn32_3766 - DNA-directed RNA polymerase, beta subunit 3738 44.44 0 4375342..4375710 - 122 146294849 rplL Sputcn32_3767 - 50S ribosomal protein L7/L12 3739 47.50 0 4375765..4376265 - 166 146294850 rplJ Sputcn32_3768 - 50S ribosomal protein L10 3740 44.02 0 4376532..4377233 - 233 146294851 rplA Sputcn32_3769 - 50S ribosomal protein L1 3741 44.29 0 4377238..4377666 - 142 146294852 rplK Sputcn32_3770 - 50S ribosomal protein L11 3742 46.01 0 4377794..4378345 - 183 146294853 - Sputcn32_3771 - NusG antitermination factor 3743 43.55 0 4378355..4378726 - 123 146294854 secE Sputcn32_3772 - preprotein translocase subunit SecE 3744 48.19 0 4379002..4380186 - 394 146294855 - Sputcn32_3773 - elongation factor Tu 3745 41.85 0 4380899..4381849 + 316 146294856 - Sputcn32_3774 - pantothenate kinase 3746 43.02 0 4381860..4382819 - 319 146294857 - Sputcn32_3775 - biotin--protein ligase 3747 43.86 0 4382812..4383837 - 341 146294858 - Sputcn32_3776 - UDP-N-acetylenolpyruvoylglucosamine reductase 3748 43.53 0 4384096..4385262 + 388 146294859 - Sputcn32_3777 - ribonuclease T2 3749 45.03 0 4385353..4386609 - 418 146294860 - Sputcn32_3778 - aromatic amino acid transporter 3750 43.48 0 4386609..4389032 - 807 146294861 - Sputcn32_3779 - glycerol-3-phosphate acyltransferase 3751 44.44 0 4389382..4390002 + 206 146294862 - Sputcn32_3780 - LexA repressor 3752 47.17 0 4389999..4390511 + 170 146294863 - Sputcn32_3781 - hypothetical protein 3753 45.81 0 4390907..4392445 + 512 146294864 - Sputcn32_3782 - cytochrome c oxidase, subunit II 3754 45.70 0 4392455..4394047 + 530 146294865 - Sputcn32_3783 - cytochrome-c oxidase 3755 47.97 0 4394049..4394615 + 188 146294866 - Sputcn32_3784 - cytochrome C oxidase assembly protein 3756 44.75 0 4394612..4395487 + 291 146294867 - Sputcn32_3785 - cytochrome c oxidase, subunit III 3757 44.71 0 4395712..4396467 + 251 146294868 - Sputcn32_3786 - hypothetical protein 3758 45.05 0 4396545..4397090 + 181 146294869 - Sputcn32_3787 - hypothetical protein 3759 43.76 0 4397090..4398067 + 325 146294870 - Sputcn32_3788 - cytochrome oxidase assembly 3760 47.02 0 4398082..4398987 + 301 146294871 - Sputcn32_3789 - protoheme IX farnesyltransferase 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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