version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3624 48.87 +1 4260219..4260572 - 117 146294735 - Sputcn32_3652 - endoribonuclease L-PSP 3625 47.39 0 4260637..4262166 - 509 146294736 - Sputcn32_3653 - Na+/H+ antiporter NhaC 3626 41.89 0 4262346..4262567 + 73 146294737 - Sputcn32_3654 - hypothetical protein 3627 38.50 -1 4262564..4262776 - 70 146294738 - Sputcn32_3655 - hypothetical protein 3628 43.02 0 4263245..4263853 - 202 146294739 - Sputcn32_3656 - DSBA oxidoreductase 3629 45.47 0 4263978..4265015 - 345 146294740 - Sputcn32_3657 - serine/threonine protein kinase 3630 45.06 0 4265026..4265349 - 107 146294741 - Sputcn32_3658 - hypothetical protein 3631 46.53 0 4265363..4266817 - 484 146294742 - Sputcn32_3659 - hypothetical protein 3632 42.86 0 4266828..4267121 - 97 146294743 - Sputcn32_3660 - hypothetical protein 3633 46.71 0 4267248..4268129 - 293 146294744 - Sputcn32_3661 - hypothetical protein 3634 41.39 0 4268401..4268760 + 119 146294745 - Sputcn32_3662 - DsrE family protein 3635 47.01 0 4268899..4269300 + 133 146294746 - Sputcn32_3663 - hypothetical protein 3636 40.11 -1 4269355..4270284 + 309 146294747 - Sputcn32_3664 - hypothetical protein 3637 45.64 0 4270435..4271019 + 194 146294748 - Sputcn32_3665 - hypothetical protein 3638 42.61 0 4271126..4272127 - 333 146294749 - Sputcn32_3666 - periplasmic binding protein 3639 45.47 0 4272124..4272906 - 260 146294750 - Sputcn32_3667 - ABC transporter related 3640 45.03 0 4272903..4273808 - 301 146294751 - Sputcn32_3668 - transport system permease protein 3641 44.69 0 4273850..4274791 - 313 146294752 - Sputcn32_3669 - transport system permease protein 3642 50.49 +1 4274864..4275574 - 236 146294753 - Sputcn32_3670 - hypothetical protein 3643 45.04 0 4275667..4277784 - 705 146294754 - Sputcn32_3671 - TonB-dependent receptor 3644 50.00 +1 4278104..4279705 + 533 146294755 - Sputcn32_3672 - ABC transporter related 3645 49.17 +1 4279702..4281261 + 519 146294756 - Sputcn32_3673 - ABC transporter related 3646 46.02 0 4281427..4282017 - 196 146294757 - Sputcn32_3674 - hypothetical protein 3647 40.17 -1 4282100..4283137 - 345 146294758 - Sputcn32_3675 - acyltransferase 3 3648 44.07 0 4283140..4284555 - 471 146294759 - Sputcn32_3676 - hypothetical protein 3649 47.01 0 4284726..4285076 - 116 146294760 - Sputcn32_3677 - hypothetical protein 3650 40.95 -1 4285679..4285783 + 34 146294761 - Sputcn32_3678 - hypothetical protein 3651 42.21 0 4286108..4288270 + 720 146294762 - Sputcn32_3679 - ornithine decarboxylase 3652 45.91 0 4288355..4289674 + 439 146294763 - Sputcn32_3680 - putrescine transporter 3653 46.15 0 4289799..4290953 + 384 146294764 - Sputcn32_3681 - porin 3654 50.40 +1 4291198..4293570 - 790 146294765 - Sputcn32_3682 - hypothetical protein 3655 45.26 0 4293772..4294182 - 136 146294766 - Sputcn32_3683 - hypothetical protein 3656 46.27 0 4294341..4295561 + 406 146294767 - Sputcn32_3684 - hypothetical protein 3657 43.82 0 4295739..4297388 + 549 146294768 - Sputcn32_3685 - hypothetical protein 3658 43.33 0 4297420..4298139 - 239 146294769 - Sputcn32_3686 - ThiJ/PfpI domain-containing protein 3659 43.30 0 4298383..4298994 + 203 146294770 - Sputcn32_3687 - TetR family transcriptional regulator 3660 43.92 0 4299033..4299287 - 84 146294771 - Sputcn32_3688 - hypothetical protein 3661 48.02 0 4299299..4299802 - 167 146294772 - Sputcn32_3689 - putative orphan protein 3662 50.31 +1 4299812..4300135 - 107 146294773 - Sputcn32_3690 - hypothetical protein 3663 47.81 0 4300925..4301767 - 280 146294774 - Sputcn32_3691 - uroporphyrin-III C/tetrapyrrole methyltransferase 3664 47.06 0 4301856..4303706 + 616 146294775 - Sputcn32_3692 - LppC family lipoprotein 3665 46.79 0 4303703..4304029 + 108 146294776 - Sputcn32_3693 - hypothetical protein 3666 47.98 0 4304122..4304715 + 197 146294777 - Sputcn32_3694 - phosphoheptose isomerase 3667 44.62 0 4304712..4305278 + 188 146294778 - Sputcn32_3695 - transport-associated 3668 44.05 0 4305299..4306222 - 307 146294779 - Sputcn32_3696 - hypothetical protein 3669 46.05 0 4306342..4307214 + 290 146294780 - Sputcn32_3697 - LysR family transcriptional regulator 3670 48.35 0 4307284..4308282 - 332 146294781 - Sputcn32_3698 - tryptophanyl-tRNA synthetase 3671 46.40 0 4308327..4309007 - 226 146294782 - Sputcn32_3699 - phosphoglycolate phosphatase 3672 46.98 0 4309012..4309722 - 236 146294783 - Sputcn32_3700 - ribulose-phosphate 3-epimerase 3673 41.80 0 4309952..4310317 + 121 146294784 - Sputcn32_3701 - hypothetical protein 3674 38.71 -1 4310317..4310502 + 61 146294785 - Sputcn32_3702 - hypothetical protein 3675 41.55 0 4310520..4311359 - 279 146294786 - Sputcn32_3703 - DNA adenine methylase 3676 45.19 0 4311408..4312799 - 463 146294787 - Sputcn32_3704 - sporulation domain-containing protein 3677 43.70 0 4312818..4313897 - 359 146294788 - Sputcn32_3705 - 3-dehydroquinate synthase 3678 45.35 0 4313903..4314418 - 171 146294789 - Sputcn32_3706 - shikimate kinase I 3679 38.65 -1 4314635..4316686 - 683 146294790 - Sputcn32_3707 - type IV pilus secretin PilQ 3680 40.66 -1 4316708..4317226 - 172 146294791 - Sputcn32_3708 - pilus assembly protein, PilQ 3681 37.00 -2 4317223..4317849 - 208 146294792 - Sputcn32_3709 - pilus assembly protein, PilO 3682 41.37 0 4317846..4318430 - 194 146294793 - Sputcn32_3710 - fimbrial assembly family protein 3683 41.85 0 4318418..4319497 - 359 146294794 - Sputcn32_3711 - type IV pilus assembly protein PilM 3684 44.68 0 4319686..4322205 + 839 146294795 - Sputcn32_3712 - 1A family penicillin-binding protein 3685 48.10 0 4322287..4323654 - 455 146294796 - Sputcn32_3713 - argininosuccinate lyase 3686 49.35 +1 4323747..4324970 - 407 146294797 - Sputcn32_3714 - argininosuccinate synthase 3687 46.80 0 4325030..4325935 - 301 146294798 - Sputcn32_3715 - ornithine carbamoyltransferase 3688 50.32 +1 4325948..4326730 - 260 146294799 - Sputcn32_3716 - acetylglutamate kinase 3689 46.44 0 4326762..4327814 - 350 146294800 argC Sputcn32_3717 - N-acetyl-gamma-glutamyl-phosphate reductase 3690 49.48 +1 4328365..4331034 + 889 146294801 - Sputcn32_3718 - phosphoenolpyruvate carboxylase 3691 45.05 0 4331034..4331579 + 181 146294802 - Sputcn32_3719 - hypothetical protein 3692 48.39 0 4331670..4332944 - 424 146294803 - Sputcn32_3720 - competence/damage-inducible protein CinA 3693 41.84 0 4338895..4339482 - 195 146294804 - Sputcn32_3721 - redoxin domain-containing protein 3694 40.42 -1 4339479..4339958 - 159 146294805 - Sputcn32_3722 - cytochrome C biogenesis protein 3695 41.08 -1 4339955..4340509 - 184 146294806 - Sputcn32_3723 - periplasmic protein thiol--disulphide oxidoreductase DsbE 3696 44.60 0 4340521..4342500 - 659 146294807 - Sputcn32_3724 - cytochrome c-type biogenesis protein CcmF 3697 42.63 0 4342897..4344144 + 415 146294808 - Sputcn32_3725 - TPR repeat-containing protein 3698 42.67 0 4344206..4344505 - 99 146294809 - Sputcn32_3726 - cytochrome c, class I 3699 40.71 -1 4344826..4345476 + 216 146294810 - Sputcn32_3727 - cytochrome c biogenesis protein CcmA 3700 44.10 0 4345488..4346174 + 228 146294811 - Sputcn32_3728 - heme exporter protein CcmB 3701 44.04 0 4346176..4346922 + 248 146294812 - Sputcn32_3729 - heme exporter protein CcmC 3702 41.79 0 4346922..4347122 + 66 146294813 - Sputcn32_3730 - Heme exporter protein D (CcmD) 3703 41.92 0 4347119..4347607 + 162 146294814 - Sputcn32_3731 - cytochrome c-type biogenesis protein CcmE 3704 50.00 +1 4348277..4348672 - 131 146294815 rplQ Sputcn32_3733 - 50S ribosomal protein L17 3705 48.18 0 4348713..4349702 - 329 146294816 - Sputcn32_3734 - DNA-directed RNA polymerase subunit alpha 3706 45.57 0 4349727..4350347 - 206 146294817 rpsD Sputcn32_3735 - 30S ribosomal protein S4 3707 47.84 0 4350380..4350772 - 130 146294818 - Sputcn32_3736 - 30S ribosomal protein S11 3708 46.78 0 4350788..4351144 - 118 146294819 rpsM Sputcn32_3737 - 30S ribosomal protein S13 3709 45.61 0 4351261..4351374 - 37 146294820 rpmJ Sputcn32_3738 - 50S ribosomal protein L36 3710 44.59 0 4351396..4352736 - 446 146294821 secY Sputcn32_3739 - preprotein translocase subunit SecY 3711 47.36 0 4352744..4353178 - 144 146294822 rplO Sputcn32_3740 - 50S ribosomal protein L15 3712 43.72 0 4353182..4353364 - 60 146294823 rpmD Sputcn32_3741 - 50S ribosomal protein L30 3713 47.22 0 4353371..4353874 - 167 146294824 rpsE Sputcn32_3742 - 30S ribosomal protein S5 3714 50.43 +1 4353887..4354237 - 116 146294825 rplR Sputcn32_3743 - 50S ribosomal protein L18 3715 47.57 0 4354248..4354781 - 177 146294826 rplF Sputcn32_3744 - 50S ribosomal protein L6 3716 47.33 0 4354792..4355184 - 130 146294827 rpsH Sputcn32_3745 - 30S ribosomal protein S8 3717 46.73 0 4355209..4355514 - 101 146294828 rpsN Sputcn32_3746 - 30S ribosomal protein S14 3718 45.00 0 4355525..4356064 - 179 146294829 rplE Sputcn32_3747 - 50S ribosomal protein L5 3719 41.90 0 4356077..4356391 - 104 146294830 rplX Sputcn32_3748 - 50S ribosomal protein L24 3720 47.43 0 4356403..4356771 - 122 146294831 rplN Sputcn32_3749 - 50S ribosomal protein L14 3721 41.37 0 4356950..4357198 - 82 146294832 - Sputcn32_3750 - ribosomal protein S17 3722 47.40 0 4357198..4357389 - 63 146294833 - Sputcn32_3751 - 50S ribosomal protein L29 3723 46.72 0 4357389..4357799 - 136 146294834 rplP Sputcn32_3752 - 50S ribosomal protein L16 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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