IslandPathversion 1.0

IslandPath Analysis: Shewanella putrefaciens CN-32



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 44.78 STD DEV: 3.68
Shewanella putrefaciens CN-32, complete genome - 1..4659220
3972 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3612	 44.04	0	4243784..4244680	+	298	146294723	-	Sputcn32_3640	-	phospholipid/glycerol acyltransferase
3613	 43.81	0	4244694..4245638	+	314	146294724	-	Sputcn32_3641	-	phospholipid/glycerol acyltransferase
3614	 49.70	+1	4245635..4246141	-	168	146294725	-	Sputcn32_3642	-	hypothetical protein
3615	 51.56	+1	4246442..4247209	+	255	146294726	-	Sputcn32_3643	-	GntR family transcriptional regulator
3616	 50.28	+1	4247262..4248140	+	292	146294727	prpB	Sputcn32_3644	-	2-methylisocitrate lyase
3617	 50.89	+1	4248305..4249432	+	375	146294728	-	Sputcn32_3645	-	methylcitrate synthase
3618	 52.14	+2	4249501..4252116	+	871	146294729	-	Sputcn32_3646	-	aconitate hydratase
3619	 52.60	+2	4252210..4253403	+	397	146294730	-	Sputcn32_3647	-	putative AcnD-accessory protein PrpF
3620	 42.68	0	4253654..4258189	+	1511	146294731	-	Sputcn32_3648	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
3621	 47.89	0	4258248..4259339	-	363	146294732	-	Sputcn32_3649	-	branched-chain amino acid aminotransferase
3622	 47.62	0	4259466..4259738	+	90	146294733	-	Sputcn32_3650	-	transcriptional antiterminator, Rof
3623	 47.08	0	4259752..4260093	+	113	146294734	-	Sputcn32_3651	-	hypothetical protein
3624	 48.87	+1	4260219..4260572	-	117	146294735	-	Sputcn32_3652	-	endoribonuclease L-PSP
3625	 47.39	0	4260637..4262166	-	509	146294736	-	Sputcn32_3653	-	Na+/H+ antiporter NhaC
3626	 41.89	0	4262346..4262567	+	73	146294737	-	Sputcn32_3654	-	hypothetical protein
3627	 38.50	-1	4262564..4262776	-	70	146294738	-	Sputcn32_3655	-	hypothetical protein
3628	 43.02	0	4263245..4263853	-	202	146294739	-	Sputcn32_3656	-	DSBA oxidoreductase
3629	 45.47	0	4263978..4265015	-	345	146294740	-	Sputcn32_3657	-	serine/threonine protein kinase
3630	 45.06	0	4265026..4265349	-	107	146294741	-	Sputcn32_3658	-	hypothetical protein
3631	 46.53	0	4265363..4266817	-	484	146294742	-	Sputcn32_3659	-	hypothetical protein
3632	 42.86	0	4266828..4267121	-	97	146294743	-	Sputcn32_3660	-	hypothetical protein
3633	 46.71	0	4267248..4268129	-	293	146294744	-	Sputcn32_3661	-	hypothetical protein
3634	 41.39	0	4268401..4268760	+	119	146294745	-	Sputcn32_3662	-	DsrE family protein
3635	 47.01	0	4268899..4269300	+	133	146294746	-	Sputcn32_3663	-	hypothetical protein
3636	 40.11	-1	4269355..4270284	+	309	146294747	-	Sputcn32_3664	-	hypothetical protein
3637	 45.64	0	4270435..4271019	+	194	146294748	-	Sputcn32_3665	-	hypothetical protein
3638	 42.61	0	4271126..4272127	-	333	146294749	-	Sputcn32_3666	-	periplasmic binding protein
3639	 45.47	0	4272124..4272906	-	260	146294750	-	Sputcn32_3667	-	ABC transporter related
3640	 45.03	0	4272903..4273808	-	301	146294751	-	Sputcn32_3668	-	transport system permease protein
3641	 44.69	0	4273850..4274791	-	313	146294752	-	Sputcn32_3669	-	transport system permease protein
3642	 50.49	+1	4274864..4275574	-	236	146294753	-	Sputcn32_3670	-	hypothetical protein
3643	 45.04	0	4275667..4277784	-	705	146294754	-	Sputcn32_3671	-	TonB-dependent receptor
3644	 50.00	+1	4278104..4279705	+	533	146294755	-	Sputcn32_3672	-	ABC transporter related
3645	 49.17	+1	4279702..4281261	+	519	146294756	-	Sputcn32_3673	-	ABC transporter related
3646	 46.02	0	4281427..4282017	-	196	146294757	-	Sputcn32_3674	-	hypothetical protein
3647	 40.17	-1	4282100..4283137	-	345	146294758	-	Sputcn32_3675	-	acyltransferase 3
3648	 44.07	0	4283140..4284555	-	471	146294759	-	Sputcn32_3676	-	hypothetical protein
3649	 47.01	0	4284726..4285076	-	116	146294760	-	Sputcn32_3677	-	hypothetical protein
3650	 40.95	-1	4285679..4285783	+	34	146294761	-	Sputcn32_3678	-	hypothetical protein
3651	 42.21	0	4286108..4288270	+	720	146294762	-	Sputcn32_3679	-	ornithine decarboxylase
3652	 45.91	0	4288355..4289674	+	439	146294763	-	Sputcn32_3680	-	putrescine transporter
3653	 46.15	0	4289799..4290953	+	384	146294764	-	Sputcn32_3681	-	porin
3654	 50.40	+1	4291198..4293570	-	790	146294765	-	Sputcn32_3682	-	hypothetical protein
3655	 45.26	0	4293772..4294182	-	136	146294766	-	Sputcn32_3683	-	hypothetical protein
3656	 46.27	0	4294341..4295561	+	406	146294767	-	Sputcn32_3684	-	hypothetical protein
3657	 43.82	0	4295739..4297388	+	549	146294768	-	Sputcn32_3685	-	hypothetical protein
3658	 43.33	0	4297420..4298139	-	239	146294769	-	Sputcn32_3686	-	ThiJ/PfpI domain-containing protein
3659	 43.30	0	4298383..4298994	+	203	146294770	-	Sputcn32_3687	-	TetR family transcriptional regulator
3660	 43.92	0	4299033..4299287	-	84	146294771	-	Sputcn32_3688	-	hypothetical protein
3661	 48.02	0	4299299..4299802	-	167	146294772	-	Sputcn32_3689	-	putative orphan protein
3662	 50.31	+1	4299812..4300135	-	107	146294773	-	Sputcn32_3690	-	hypothetical protein
3663	 47.81	0	4300925..4301767	-	280	146294774	-	Sputcn32_3691	-	uroporphyrin-III C/tetrapyrrole methyltransferase
3664	 47.06	0	4301856..4303706	+	616	146294775	-	Sputcn32_3692	-	LppC family lipoprotein
3665	 46.79	0	4303703..4304029	+	108	146294776	-	Sputcn32_3693	-	hypothetical protein
3666	 47.98	0	4304122..4304715	+	197	146294777	-	Sputcn32_3694	-	phosphoheptose isomerase
3667	 44.62	0	4304712..4305278	+	188	146294778	-	Sputcn32_3695	-	transport-associated
3668	 44.05	0	4305299..4306222	-	307	146294779	-	Sputcn32_3696	-	hypothetical protein
3669	 46.05	0	4306342..4307214	+	290	146294780	-	Sputcn32_3697	-	LysR family transcriptional regulator
3670	 48.35	0	4307284..4308282	-	332	146294781	-	Sputcn32_3698	-	tryptophanyl-tRNA synthetase
3671	 46.40	0	4308327..4309007	-	226	146294782	-	Sputcn32_3699	-	phosphoglycolate phosphatase
3672	 46.98	0	4309012..4309722	-	236	146294783	-	Sputcn32_3700	-	ribulose-phosphate 3-epimerase
3673	 41.80	0	4309952..4310317	+	121	146294784	-	Sputcn32_3701	-	hypothetical protein
3674	 38.71	-1	4310317..4310502	+	61	146294785	-	Sputcn32_3702	-	hypothetical protein
3675	 41.55	0	4310520..4311359	-	279	146294786	-	Sputcn32_3703	-	DNA adenine methylase
3676	 45.19	0	4311408..4312799	-	463	146294787	-	Sputcn32_3704	-	sporulation domain-containing protein
3677	 43.70	0	4312818..4313897	-	359	146294788	-	Sputcn32_3705	-	3-dehydroquinate synthase
3678	 45.35	0	4313903..4314418	-	171	146294789	-	Sputcn32_3706	-	shikimate kinase I
3679	 38.65	-1	4314635..4316686	-	683	146294790	-	Sputcn32_3707	-	type IV pilus secretin PilQ
3680	 40.66	-1	4316708..4317226	-	172	146294791	-	Sputcn32_3708	-	pilus assembly protein, PilQ
3681	 37.00	-2	4317223..4317849	-	208	146294792	-	Sputcn32_3709	-	pilus assembly protein, PilO
3682	 41.37	0	4317846..4318430	-	194	146294793	-	Sputcn32_3710	-	fimbrial assembly family protein
3683	 41.85	0	4318418..4319497	-	359	146294794	-	Sputcn32_3711	-	type IV pilus assembly protein PilM
3684	 44.68	0	4319686..4322205	+	839	146294795	-	Sputcn32_3712	-	1A family penicillin-binding protein
3685	 48.10	0	4322287..4323654	-	455	146294796	-	Sputcn32_3713	-	argininosuccinate lyase
3686	 49.35	+1	4323747..4324970	-	407	146294797	-	Sputcn32_3714	-	argininosuccinate synthase
3687	 46.80	0	4325030..4325935	-	301	146294798	-	Sputcn32_3715	-	ornithine carbamoyltransferase
3688	 50.32	+1	4325948..4326730	-	260	146294799	-	Sputcn32_3716	-	acetylglutamate kinase
3689	 46.44	0	4326762..4327814	-	350	146294800	argC	Sputcn32_3717	-	N-acetyl-gamma-glutamyl-phosphate reductase
3690	 49.48	+1	4328365..4331034	+	889	146294801	-	Sputcn32_3718	-	phosphoenolpyruvate carboxylase
3691	 45.05	0	4331034..4331579	+	181	146294802	-	Sputcn32_3719	-	hypothetical protein
3692	 48.39	0	4331670..4332944	-	424	146294803	-	Sputcn32_3720	-	competence/damage-inducible protein CinA
3693	 41.84	0	4338895..4339482	-	195	146294804	-	Sputcn32_3721	-	redoxin domain-containing protein
3694	 40.42	-1	4339479..4339958	-	159	146294805	-	Sputcn32_3722	-	cytochrome C biogenesis protein
3695	 41.08	-1	4339955..4340509	-	184	146294806	-	Sputcn32_3723	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
3696	 44.60	0	4340521..4342500	-	659	146294807	-	Sputcn32_3724	-	cytochrome c-type biogenesis protein CcmF
3697	 42.63	0	4342897..4344144	+	415	146294808	-	Sputcn32_3725	-	TPR repeat-containing protein
3698	 42.67	0	4344206..4344505	-	99	146294809	-	Sputcn32_3726	-	cytochrome c, class I
3699	 40.71	-1	4344826..4345476	+	216	146294810	-	Sputcn32_3727	-	cytochrome c biogenesis protein CcmA
3700	 44.10	0	4345488..4346174	+	228	146294811	-	Sputcn32_3728	-	heme exporter protein CcmB
3701	 44.04	0	4346176..4346922	+	248	146294812	-	Sputcn32_3729	-	heme exporter protein CcmC
3702	 41.79	0	4346922..4347122	+	66	146294813	-	Sputcn32_3730	-	Heme exporter protein D (CcmD)
3703	 41.92	0	4347119..4347607	+	162	146294814	-	Sputcn32_3731	-	cytochrome c-type biogenesis protein CcmE
3704	 50.00	+1	4348277..4348672	-	131	146294815	rplQ	Sputcn32_3733	-	50S ribosomal protein L17
3705	 48.18	0	4348713..4349702	-	329	146294816	-	Sputcn32_3734	-	DNA-directed RNA polymerase subunit alpha
3706	 45.57	0	4349727..4350347	-	206	146294817	rpsD	Sputcn32_3735	-	30S ribosomal protein S4
3707	 47.84	0	4350380..4350772	-	130	146294818	-	Sputcn32_3736	-	30S ribosomal protein S11
3708	 46.78	0	4350788..4351144	-	118	146294819	rpsM	Sputcn32_3737	-	30S ribosomal protein S13
3709	 45.61	0	4351261..4351374	-	37	146294820	rpmJ	Sputcn32_3738	-	50S ribosomal protein L36
3710	 44.59	0	4351396..4352736	-	446	146294821	secY	Sputcn32_3739	-	preprotein translocase subunit SecY
3711	 47.36	0	4352744..4353178	-	144	146294822	rplO	Sputcn32_3740	-	50S ribosomal protein L15
44.78	MEAN

3.68	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.