version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3554 47.58 0 4159715..4160542 - 275 146294665 dapF Sputcn32_3582 - diaminopimelate epimerase 3555 47.71 0 4160619..4161863 - 414 146294666 - Sputcn32_3583 - diaminopimelate decarboxylase 3556 45.89 0 4161915..4162121 - 68 146294667 - Sputcn32_3584 - hypothetical protein 3557 45.76 0 4162189..4162518 + 109 146294668 - Sputcn32_3585 - frataxin family protein 3558 42.32 0 4162573..4164987 - 804 146294669 cyaA Sputcn32_3586 - adenylate cyclase 3559 47.59 0 4165190..4166122 + 310 146294670 hemC Sputcn32_3587 - porphobilinogen deaminase 3560 45.61 0 4166127..4166867 + 246 146294671 - Sputcn32_3588 - uroporphyrinogen III synthase HEM4 3561 43.83 0 4166928..4168127 + 399 146294672 - Sputcn32_3589 - protein of unknown function DUF513, hemX 3562 44.04 0 4168124..4169290 + 388 146294673 - Sputcn32_3590 - HemY domain-containing protein 3563 53.18 +2 4169699..4182361 + 4220 146294674 - Sputcn32_3591 - putative outer membrane adhesin like proteiin 3564 41.92 0 4182451..4184628 + 725 146294675 - Sputcn32_3592 - ABC transporter related 3565 43.75 0 4184625..4186007 + 460 146294676 - Sputcn32_3593 - HlyD family type I secretion membrane fusion protein 3566 42.94 0 4186034..4187449 + 471 146294677 - Sputcn32_3594 - TolC family type I secretion outer membrane protein 3567 44.33 0 4187446..4188054 + 202 146294678 - Sputcn32_3595 - OmpA/MotB domain-containing protein 3568 40.79 -1 4188070..4188780 + 236 146294679 - Sputcn32_3596 - hypothetical protein 3569 40.73 -1 4188790..4190709 + 639 146294680 - Sputcn32_3597 - diguanylate cyclase/phosphodiesterase 3570 40.62 -1 4191716..4194349 + 877 146294681 - Sputcn32_3598 - diguanylate cyclase/phosphodiesterase with GAF sensor 3571 44.81 0 4194386..4196398 - 670 146294682 - Sputcn32_3599 - ATP-dependent DNA helicase Rep 3572 40.70 -1 4196607..4196864 + 85 146294683 - Sputcn32_3600 - hypothetical protein 3573 36.23 -2 4196960..4197304 + 114 146294684 - Sputcn32_3601 - hypothetical protein 3574 41.74 0 4197351..4197707 + 118 146294685 - Sputcn32_3602 - hypothetical protein 3575 46.04 0 4197871..4199082 + 403 146294686 - Sputcn32_3603 - NnrS family protein 3576 43.19 0 4199066..4200475 + 469 146294687 - Sputcn32_3604 - nitrite reductase (cytochrome; ammonia-forming) 3577 44.18 0 4200927..4202411 + 494 146294688 - Sputcn32_3605 - hypothetical protein 3578 43.83 0 4202505..4203314 + 269 146294689 - Sputcn32_3606 - phosphoesterase, PA-phosphatase related 3579 47.72 0 4203508..4204383 - 291 146294690 - Sputcn32_3607 - import inner membrane translocase, subunit Tim44 3580 36.22 -2 4204831..4205349 - 172 146294691 - Sputcn32_3608 - hypothetical protein 3581 32.21 -2 4205397..4206017 - 206 146294692 - Sputcn32_3609 - hypothetical protein 3582 53.26 +2 4206204..4207337 - 377 146294693 - Sputcn32_3610 - alanine--glyoxylate transaminase 3583 52.95 +2 4207585..4209195 - 536 146294694 - Sputcn32_3611 - threonine dehydratase 3584 53.92 +2 4209198..4211057 - 619 146294695 - Sputcn32_3612 - dihydroxy-acid dehydratase 3585 47.67 0 4211115..4211372 - 85 146294696 ilvM Sputcn32_3613 - acetolactate synthase 2 regulatory subunit 3586 53.23 +2 4211369..4213042 - 557 146294697 - Sputcn32_3614 - acetolactate synthase 2 catalytic subunit 3587 47.40 0 4213654..4215132 - 492 146294698 - Sputcn32_3615 - ketol-acid reductoisomerase 3588 52.46 +2 4215366..4216238 + 290 146294699 - Sputcn32_3616 - DNA-binding transcriptional regulator IlvY 3589 44.95 0 4216235..4217551 - 438 146294700 - Sputcn32_3617 - hypothetical protein 3590 44.87 0 4218089..4218556 - 155 146294701 - Sputcn32_3618 - hypothetical protein 3591 45.23 0 4218680..4219318 + 212 146294702 - Sputcn32_3619 - ERCC4 domain-containing protein 3592 47.08 0 4219347..4220030 - 227 146294703 - Sputcn32_3620 - nucleotidase 3593 47.49 0 4220333..4221229 + 298 146294704 - Sputcn32_3621 - LysR family transcriptional regulator 3594 40.25 -1 4221333..4221809 + 158 146294705 - Sputcn32_3622 - hypothetical protein 3595 43.56 0 4221845..4223800 - 651 146294706 - Sputcn32_3623 - hypothetical protein 3596 44.30 0 4223800..4224027 - 75 146294707 - Sputcn32_3624 - XRE family transcriptional regulator 3597 47.76 0 4224187..4225302 - 371 146294708 - Sputcn32_3625 - filamentation induced by cAMP protein Fic 3598 45.08 0 4225615..4226448 + 277 146294709 - Sputcn32_3626 - hypothetical protein 3599 43.99 0 4226466..4227563 - 365 146294710 - Sputcn32_3627 - aminoglycoside phosphotransferase 3600 48.00 0 4227556..4228428 - 290 146294711 - Sputcn32_3628 - hypothetical protein 3601 47.71 0 4228630..4230159 - 509 146294712 - Sputcn32_3629 - hypothetical protein 3602 46.37 0 4230362..4231036 + 224 146294713 - Sputcn32_3630 - guanylate kinase 3603 50.90 +1 4231095..4231373 + 92 146294714 rpoZ Sputcn32_3631 - DNA-directed RNA polymerase subunit omega 3604 48.67 +1 4231419..4233524 + 701 146294715 - Sputcn32_3632 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3605 47.14 0 4233550..4233933 + 127 146294716 - Sputcn32_3633 - putative endoribonuclease L-PSP 3606 46.43 0 4234173..4235837 + 554 146294717 - Sputcn32_3634 - AMP-dependent synthetase and ligase 3607 42.90 0 4236017..4236967 + 316 146294718 - Sputcn32_3635 - CaCA family Na(+)/Ca(+) antiporter 3608 44.97 0 4237309..4239723 + 804 146294719 - Sputcn32_3636 - TonB-dependent receptor 3609 49.16 +1 4240084..4241208 - 374 146294720 - Sputcn32_3637 - hypothetical protein 3610 45.59 0 4241472..4241993 + 173 146294721 - Sputcn32_3638 - superoxide dismutase, copper/zinc binding 3611 47.84 0 4242153..4243682 + 509 146294722 - Sputcn32_3639 - Mg chelatase, subunit ChlI 3612 44.04 0 4243784..4244680 + 298 146294723 - Sputcn32_3640 - phospholipid/glycerol acyltransferase 3613 43.81 0 4244694..4245638 + 314 146294724 - Sputcn32_3641 - phospholipid/glycerol acyltransferase 3614 49.70 +1 4245635..4246141 - 168 146294725 - Sputcn32_3642 - hypothetical protein 3615 51.56 +1 4246442..4247209 + 255 146294726 - Sputcn32_3643 - GntR family transcriptional regulator 3616 50.28 +1 4247262..4248140 + 292 146294727 prpB Sputcn32_3644 - 2-methylisocitrate lyase 3617 50.89 +1 4248305..4249432 + 375 146294728 - Sputcn32_3645 - methylcitrate synthase 3618 52.14 +2 4249501..4252116 + 871 146294729 - Sputcn32_3646 - aconitate hydratase 3619 52.60 +2 4252210..4253403 + 397 146294730 - Sputcn32_3647 - putative AcnD-accessory protein PrpF 3620 42.68 0 4253654..4258189 + 1511 146294731 - Sputcn32_3648 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 3621 47.89 0 4258248..4259339 - 363 146294732 - Sputcn32_3649 - branched-chain amino acid aminotransferase 3622 47.62 0 4259466..4259738 + 90 146294733 - Sputcn32_3650 - transcriptional antiterminator, Rof 3623 47.08 0 4259752..4260093 + 113 146294734 - Sputcn32_3651 - hypothetical protein 3624 48.87 +1 4260219..4260572 - 117 146294735 - Sputcn32_3652 - endoribonuclease L-PSP 3625 47.39 0 4260637..4262166 - 509 146294736 - Sputcn32_3653 - Na+/H+ antiporter NhaC 3626 41.89 0 4262346..4262567 + 73 146294737 - Sputcn32_3654 - hypothetical protein 3627 38.50 -1 4262564..4262776 - 70 146294738 - Sputcn32_3655 - hypothetical protein 3628 43.02 0 4263245..4263853 - 202 146294739 - Sputcn32_3656 - DSBA oxidoreductase 3629 45.47 0 4263978..4265015 - 345 146294740 - Sputcn32_3657 - serine/threonine protein kinase 3630 45.06 0 4265026..4265349 - 107 146294741 - Sputcn32_3658 - hypothetical protein 3631 46.53 0 4265363..4266817 - 484 146294742 - Sputcn32_3659 - hypothetical protein 3632 42.86 0 4266828..4267121 - 97 146294743 - Sputcn32_3660 - hypothetical protein 3633 46.71 0 4267248..4268129 - 293 146294744 - Sputcn32_3661 - hypothetical protein 3634 41.39 0 4268401..4268760 + 119 146294745 - Sputcn32_3662 - DsrE family protein 3635 47.01 0 4268899..4269300 + 133 146294746 - Sputcn32_3663 - hypothetical protein 3636 40.11 -1 4269355..4270284 + 309 146294747 - Sputcn32_3664 - hypothetical protein 3637 45.64 0 4270435..4271019 + 194 146294748 - Sputcn32_3665 - hypothetical protein 3638 42.61 0 4271126..4272127 - 333 146294749 - Sputcn32_3666 - periplasmic binding protein 3639 45.47 0 4272124..4272906 - 260 146294750 - Sputcn32_3667 - ABC transporter related 3640 45.03 0 4272903..4273808 - 301 146294751 - Sputcn32_3668 - transport system permease protein 3641 44.69 0 4273850..4274791 - 313 146294752 - Sputcn32_3669 - transport system permease protein 3642 50.49 +1 4274864..4275574 - 236 146294753 - Sputcn32_3670 - hypothetical protein 3643 45.04 0 4275667..4277784 - 705 146294754 - Sputcn32_3671 - TonB-dependent receptor 3644 50.00 +1 4278104..4279705 + 533 146294755 - Sputcn32_3672 - ABC transporter related 3645 49.17 +1 4279702..4281261 + 519 146294756 - Sputcn32_3673 - ABC transporter related 3646 46.02 0 4281427..4282017 - 196 146294757 - Sputcn32_3674 - hypothetical protein 3647 40.17 -1 4282100..4283137 - 345 146294758 - Sputcn32_3675 - acyltransferase 3 3648 44.07 0 4283140..4284555 - 471 146294759 - Sputcn32_3676 - hypothetical protein 3649 47.01 0 4284726..4285076 - 116 146294760 - Sputcn32_3677 - hypothetical protein 3650 40.95 -1 4285679..4285783 + 34 146294761 - Sputcn32_3678 - hypothetical protein 3651 42.21 0 4286108..4288270 + 720 146294762 - Sputcn32_3679 - ornithine decarboxylase 3652 45.91 0 4288355..4289674 + 439 146294763 - Sputcn32_3680 - putrescine transporter 3653 46.15 0 4289799..4290953 + 384 146294764 - Sputcn32_3681 - porin 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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