version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3253 41.83 0 3815928..3816821 - 297 146294364 - Sputcn32_3277 - HflC protein 3254 45.14 0 3816825..3817967 - 380 146294365 - Sputcn32_3278 - HflK protein 3255 46.41 0 3818004..3819311 - 435 146294366 - Sputcn32_3279 - GTP-binding protein, HSR1-related 3256 45.42 0 3819335..3819607 - 90 146294367 - Sputcn32_3280 - RNA chaperone Hfq 3257 44.59 0 3819698..3820612 - 304 146294368 - Sputcn32_3281 - tRNA delta(2)-isopentenylpyrophosphate transferase 3258 44.81 0 3820628..3822553 - 641 146294369 - Sputcn32_3282 - DNA mismatch repair protein MutL 3259 44.44 0 3822555..3823985 - 476 146294370 - Sputcn32_3283 - N-acetylmuramoyl-L-alanine amidase 3260 40.74 -1 3823994..3824452 - 152 146294371 - Sputcn32_3284 - hypothetical protein 3261 47.00 0 3824541..3826040 - 499 146294372 - Sputcn32_3285 - carbohydrate kinase, YjeF related protein 3262 42.54 0 3826334..3826789 - 151 146294373 - Sputcn32_3286 - hypothetical protein 3263 43.22 0 3828585..3829130 - 181 146294374 - Sputcn32_3287 - oligoribonuclease 3264 45.07 0 3829243..3830307 + 354 146294375 - Sputcn32_3288 - ribosome-associated GTPase 3265 45.98 0 3830375..3831244 + 289 146294376 - Sputcn32_3289 - phosphatidylserine decarboxylase 3266 42.15 0 3831260..3832144 + 294 146294377 - Sputcn32_3290 - hypothetical protein 3267 41.32 0 3832214..3835420 + 1068 146294378 - Sputcn32_3291 - MscS mechanosensitive ion channel 3268 43.71 0 3835435..3836157 + 240 146294379 - Sputcn32_3292 - glycerophosphoryl diester phosphodiesterase 3269 39.88 -1 3836173..3836508 - 111 146294380 - Sputcn32_3293 - hypothetical protein 3270 45.46 0 3836905..3838479 - 524 146294381 - Sputcn32_3294 - methyl-accepting chemotaxis sensory transducer 3271 42.71 0 3838730..3838921 + 63 146294382 - Sputcn32_3295 - BFD/(2Fe-2S)-binding domain-containing protein 3272 44.90 0 3839176..3839832 - 218 146294383 - Sputcn32_3296 - thiopurine S-methyltransferase 3273 40.35 -1 3839936..3840277 - 113 146294384 - Sputcn32_3297 - hypothetical protein 3274 44.78 0 3840526..3842334 + 602 146294385 - Sputcn32_3298 - protein kinase 3275 46.53 0 3842363..3844765 - 800 146294386 - Sputcn32_3299 - hypothetical protein 3276 45.43 0 3844834..3848538 - 1234 146294387 - Sputcn32_3300 - multi-sensor hybrid histidine kinase 3277 44.66 0 3848750..3850144 - 464 146294388 - Sputcn32_3301 - PhoH family protein 3278 49.16 +1 3850547..3853453 + 968 146294389 - Sputcn32_3302 - ATP-dependent helicase HepA 3279 45.76 0 3853623..3854507 + 294 146294390 - Sputcn32_3303 - hypothetical protein 3280 44.86 0 3854566..3855372 - 268 146294391 - Sputcn32_3304 - enoyl-CoA hydratase 3281 45.08 0 3855891..3856886 + 331 146294392 - Sputcn32_3305 - CheC, inhibitor of MCP methylation 3282 43.28 0 3856905..3857879 + 324 146294393 - Sputcn32_3306 - diguanylate cyclase 3283 43.70 0 3857951..3858355 - 134 146294394 - Sputcn32_3307 - hypothetical protein 3284 42.75 0 3858399..3859184 - 261 146294395 - Sputcn32_3308 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 3285 45.37 0 3859294..3860082 - 262 146294396 - Sputcn32_3309 - ABC-3 protein 3286 47.41 0 3860088..3860996 - 302 146294397 - Sputcn32_3310 - periplasmic solute binding protein 3287 42.95 0 3860980..3862164 - 394 146294398 - Sputcn32_3311 - hypothetical protein 3288 43.99 0 3862242..3862532 - 96 146294399 - Sputcn32_3312 - hypothetical protein 3289 36.51 -2 3862819..3862944 + 41 146294400 - Sputcn32_3313 - hypothetical protein 3290 47.99 0 3863119..3864831 - 570 146294401 - Sputcn32_3314 - formate--tetrahydrofolate ligase 3291 45.61 0 3865006..3865836 - 276 146294402 - Sputcn32_3315 - dehydratase 3292 43.15 0 3866245..3867018 + 257 146294403 - Sputcn32_3316 - methyltransferase type 11 3293 45.67 0 3867043..3867942 - 299 146294404 - Sputcn32_3317 - GumN family protein 3294 42.39 0 3867991..3868299 + 102 146294405 - Sputcn32_3318 - hypothetical protein 3295 42.91 0 3868463..3870217 + 584 146294406 - Sputcn32_3319 - diguanylate cyclase/phosphodiesterase 3296 40.76 -1 3870231..3870755 - 174 146294407 - Sputcn32_3320 - hypothetical protein 3297 38.51 -1 3871028..3871336 + 102 146294408 - Sputcn32_3321 - hypothetical protein 3298 41.57 0 3871368..3871877 - 169 146294409 - Sputcn32_3322 - hypothetical protein 3299 42.58 0 3871922..3872386 + 154 146294410 - Sputcn32_3323 - hypothetical protein 3300 43.11 0 3872469..3873266 + 265 146294411 - Sputcn32_3324 - response regulator receiver protein 3301 45.05 0 3873413..3873685 + 90 146294412 - Sputcn32_3325 - histone family protein DNA-binding protein 3302 42.28 0 3873983..3874675 + 230 146294413 - Sputcn32_3326 - hypothetical protein 3303 43.49 0 3874756..3875661 - 301 146294414 - Sputcn32_3327 - alpha-L-glutamate ligase 3304 42.22 0 3875822..3877543 - 573 146294415 - Sputcn32_3328 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase 3305 41.84 0 3877553..3877987 - 144 146294416 - Sputcn32_3329 - response regulator receiver protein 3306 41.32 0 3877984..3880137 - 717 146294417 - Sputcn32_3330 - multi-sensor signal transduction histidine kinase 3307 44.07 0 3880446..3880622 + 58 146294418 - Sputcn32_3331 - hypothetical protein 3308 45.13 0 3881024..3882379 + 451 146294419 - Sputcn32_3332 - hypothetical protein 3309 45.90 0 3882455..3883831 - 458 146294420 - Sputcn32_3333 - amino acid carrier protein 3310 44.40 0 3884078..3885514 - 478 146294421 - Sputcn32_3334 - beta-lactamase domain-containing protein 3311 42.91 0 3885639..3886484 - 281 146294422 - Sputcn32_3335 - hypothetical protein 3312 40.70 -1 3886517..3886774 - 85 146294423 - Sputcn32_3336 - redox-active disulfide protein 2 3313 47.40 0 3887094..3887420 - 108 146294424 - Sputcn32_3337 - antibiotic biosynthesis monooxygenase 3314 46.93 0 3887494..3887949 - 151 146294425 - Sputcn32_3338 - GCN5-related N-acetyltransferase 3315 45.74 0 3888148..3888558 + 136 146294426 mscL Sputcn32_3339 - large-conductance mechanosensitive channel 3316 47.22 0 3888636..3888959 - 107 146294427 - Sputcn32_3340 - antibiotic biosynthesis monooxygenase 3317 53.35 +2 3889120..3892347 - 1075 146294428 - Sputcn32_3341 - CzcA family heavy metal efflux protein 3318 53.55 +2 3892377..3893642 - 421 146294429 - Sputcn32_3342 - RND family efflux transporter MFP subunit 3319 50.24 +1 3893653..3895131 - 492 146294430 - Sputcn32_3343 - outer membrane efflux protein 3320 48.20 0 3895462..3895905 - 147 146294431 - Sputcn32_3344 - hypothetical protein 3321 47.34 0 3896111..3896317 - 68 146294432 - Sputcn32_3345 - hypothetical protein 3322 48.91 +1 3896354..3896719 - 121 146294433 - Sputcn32_3346 - hypothetical protein 3323 47.45 0 3896856..3897287 + 143 146294434 - Sputcn32_3347 - hypothetical protein 3324 50.34 +1 3897406..3897840 + 144 146294435 - Sputcn32_3348 - 3-dehydroquinate dehydratase 3325 48.67 +1 3897895..3898572 + 225 146294436 - Sputcn32_3349 - short-chain dehydrogenase/reductase SDR 3326 41.19 0 3898635..3899309 - 224 146294437 - Sputcn32_3350 - hypothetical protein 3327 47.75 0 3899776..3900552 - 258 146294438 - Sputcn32_3351 - hypothetical protein 3328 50.27 +1 3900712..3902193 + 493 146294439 - Sputcn32_3352 - UbiD family decarboxylase 3329 48.07 0 3902306..3903004 + 232 146294440 fre Sputcn32_3353 - FMN reductase 3330 38.12 -1 3903741..3904847 - 368 146294441 - Sputcn32_3354 - hypothetical protein 3331 48.97 +1 3905579..3906211 - 210 146294442 - Sputcn32_3355 - flavoprotein oxygenase 3332 43.61 0 3906229..3907512 - 427 146294443 - Sputcn32_3356 - transcriptional regulator, CadC 3333 42.09 0 3907734..3908612 - 292 146294444 - Sputcn32_3357 - copper ABC transporter, permease protein 3334 44.64 0 3908609..3909643 - 344 146294445 - Sputcn32_3358 - ABC transporter related 3335 46.84 0 3909640..3910935 - 431 146294446 - Sputcn32_3359 - periplasmic copper-binding 3336 46.75 0 3910940..3911431 - 163 146294447 - Sputcn32_3360 - NosL family protein 3337 46.84 0 3911520..3912200 - 226 146294448 - Sputcn32_3361 - formate-dependent nitrite reductase, NrfG protein 3338 43.68 0 3912235..3913017 - 260 146294449 - Sputcn32_3362 - peptidylprolyl isomerase, FKBP-type 3339 46.03 0 3913103..3913543 - 146 146294450 - Sputcn32_3363 - rhodanese domain-containing protein 3340 43.47 0 3913606..3915735 - 709 146294451 - Sputcn32_3364 - cytochrome c, putative 3341 45.96 0 3916280..3918409 + 709 146294452 - Sputcn32_3365 - cytochrome c-type biogenesis protein CcmF 3342 44.29 0 3918409..3918828 + 139 146294453 - Sputcn32_3366 - cytochrome C biogenesis protein 3343 42.74 0 3918845..3919429 + 194 146294454 - Sputcn32_3367 - redoxin domain-containing protein 3344 44.21 0 3919605..3920183 + 192 146294455 - Sputcn32_3368 - hypothetical protein 3345 46.74 0 3920249..3920539 + 96 146294456 - Sputcn32_3369 - putative mitomycin resistance protein 3346 47.37 0 3920543..3921625 - 360 146294457 - Sputcn32_3370 - hypothetical protein 3347 50.80 +1 3921696..3922760 - 354 146294458 - Sputcn32_3371 - 2-nitropropane dioxygenase, NPD 3348 45.18 0 3922843..3923703 - 286 146294459 ubiA Sputcn32_3372 - 4-hydroxybenzoate octaprenyltransferase 3349 49.70 +1 3923849..3926017 - 722 146294460 uvrD Sputcn32_3373 - DNA-dependent helicase II 3350 39.90 -1 3926965..3928410 + 481 146294461 - Sputcn32_3375 - hypothetical protein 3351 40.96 -1 3928641..3931274 + 877 146294462 - Sputcn32_3376 - helicase domain-containing protein 3352 45.08 0 3931857..3933056 + 399 146294463 - Sputcn32_3377 - hypothetical protein 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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