version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 221 57.08 +2 240460..241356 + 298 146291332 - Sputcn32_0221 - cation efflux system permease, putative 222 49.32 +1 241360..241872 + 170 146291333 - Sputcn32_0222 - lipoprotein signal peptidase 223 59.77 +2 241894..243183 + 429 146291334 - Sputcn32_0223 - transposase, IS204/IS1001/IS1096/IS1165 family protein 224 44.77 0 243253..243663 + 136 146291335 - Sputcn32_0224 - hypothetical protein 225 50.14 +1 243729..246851 - 1040 146291336 - Sputcn32_0225 - CzcA family heavy metal efflux protein 226 47.18 0 246861..247907 - 348 146291337 - Sputcn32_0226 - biotin/lipoyl attachment domain-containing protein 227 52.93 +2 247986..249230 - 414 146291338 - Sputcn32_0227 - outer membrane efflux protein 228 46.99 0 249282..249647 - 121 146291339 - Sputcn32_0228 - hypothetical protein 229 48.45 0 249734..250639 - 301 146291340 - Sputcn32_0229 - cation efflux system permease, putative 230 42.15 0 250662..251126 + 154 146291341 - Sputcn32_0230 - MerR family transcriptional regulator 231 45.43 0 251158..252066 + 302 146291342 - Sputcn32_0231 - cation diffusion facilitator family transporter 232 48.02 0 252041..252394 + 117 146291343 - Sputcn32_0232 - hypothetical protein 233 41.03 -1 252538..252927 + 129 146291344 - Sputcn32_0233 - hypothetical protein 234 42.58 0 252957..253367 + 136 146291345 - Sputcn32_0234 - hypothetical protein 235 46.47 0 253541..254446 - 301 146291346 - Sputcn32_0235 - hypothetical protein 236 39.67 -1 254455..254817 - 120 146291347 - Sputcn32_0236 - hypothetical protein 237 49.70 +1 254905..255900 - 331 146291348 - Sputcn32_0237 - phage integrase family protein 238 48.89 +1 255998..256582 - 194 146291349 - Sputcn32_0238 - hypothetical protein 239 48.82 +1 256659..257336 - 225 146291350 - Sputcn32_0239 - hypothetical protein 240 47.24 0 257841..258257 - 138 146291351 - Sputcn32_0240 - hypothetical protein 241 43.51 0 258257..258649 - 130 146291352 - Sputcn32_0241 - hypothetical protein 242 45.08 0 258732..260468 - 578 146291353 - Sputcn32_0242 - hypothetical protein 243 48.76 +1 261081..261644 - 187 146291354 - Sputcn32_0243 - ISSod10, transposase OrfB 244 49.17 +1 261628..262107 - 159 146291355 - Sputcn32_0244 - ISSod10, transposase OrfA 245 40.85 -1 262745..263848 - 367 146291356 - Sputcn32_0246 - transposase, IS4 family protein 246 39.24 -1 264071..264493 + 140 146291357 - Sputcn32_0247 - hypothetical protein 247 42.83 0 264630..265145 + 171 146291358 - Sputcn32_0248 - hypothetical protein 248 45.57 0 265142..267160 + 672 146291359 - Sputcn32_0249 - CopA family copper resistance protein 249 44.40 0 267172..267885 + 237 146291360 - Sputcn32_0250 - copper resistance B precursor 250 45.63 0 268001..268423 + 140 146291361 - Sputcn32_0251 - copper resistance protein CopC 251 40.69 -1 268438..269334 + 298 146291362 - Sputcn32_0252 - copper resistance D domain-containing protein 252 41.89 0 269410..269853 + 147 146291363 - Sputcn32_0253 - putative orphan protein 253 31.52 -2 270036..270587 - 183 146291364 - Sputcn32_0254 - hypothetical protein 254 33.58 -2 271015..272235 + 406 146291365 - Sputcn32_0255 - outer membrane porin 255 45.39 0 272702..272983 + 93 146291366 - Sputcn32_0256 - hypothetical protein 256 50.00 +1 273165..274640 - 491 146291367 - Sputcn32_0257 - sensor kinase CusS 257 51.54 +1 274633..275313 - 226 146291368 - Sputcn32_0258 - DNA-binding transcriptional activator CusR 258 51.88 +1 275503..276888 + 461 146291369 - Sputcn32_0259 - copper/silver efflux system outer membrane protein CusC 259 45.20 0 276917..277270 + 117 146291370 - Sputcn32_0260 - periplasmic copper-binding protein 260 47.64 0 277384..278676 + 430 146291371 - Sputcn32_0261 - copper/silver efflux system membrane fusion protein CusB 261 52.18 +2 278687..281833 + 1048 146291372 - Sputcn32_0262 - CzcA family heavy metal efflux protein 262 49.77 +1 281929..282360 + 143 146291373 - Sputcn32_0263 - hypothetical protein 263 54.08 +2 282487..284934 + 815 146291374 - Sputcn32_0264 - heavy metal translocating P-type ATPase 264 49.49 +1 284975..285172 + 65 146291375 - Sputcn32_0265 - hypothetical protein 265 47.29 0 285206..285943 - 245 146291376 - Sputcn32_0266 - peptidase M23B 266 44.22 0 286232..286681 - 149 146291377 - Sputcn32_0267 - hypothetical protein 267 39.60 -1 287569..287919 - 116 146291378 - Sputcn32_0269 - plastocyanin domain-containing protein 268 44.01 0 287930..290176 - 748 146291379 - Sputcn32_0270 - copper-translocating P-type ATPase 269 35.03 -2 290176..290646 - 156 146291380 - Sputcn32_0271 - MerR family transcriptional regulator 270 34.94 -2 290767..291201 - 144 146291381 - Sputcn32_0272 - hypothetical protein 271 35.07 -2 291293..291637 - 114 146291382 - Sputcn32_0273 - hypothetical protein 272 42.44 0 292164..293228 - 354 146291383 - Sputcn32_0275 - RNA-directed DNA polymerase (Reverse transcriptase) 273 44.36 0 293225..294058 - 277 146291384 - Sputcn32_0276 - integrase catalytic subunit 274 44.23 0 294097..294408 - 103 146291385 - Sputcn32_0277 - transposase IS3/IS911 family protein 275 42.15 0 294467..295090 - 207 146291386 - Sputcn32_0278 - hypothetical protein 276 43.68 0 295147..295320 - 57 146291387 - Sputcn32_0279 - hypothetical protein 277 47.26 0 295331..295531 - 66 146291388 - Sputcn32_0280 - phage integrase family site specific recombinase 278 42.97 0 295616..296953 + 445 146291389 - Sputcn32_0281 - hypothetical protein 279 48.38 0 297048..300197 - 1049 146291390 - Sputcn32_0282 - CzcA family heavy metal efflux protein 280 46.52 0 300207..301745 - 512 146291391 - Sputcn32_0283 - RND family efflux transporter MFP subunit 281 46.74 0 301767..302027 - 86 146291392 - Sputcn32_0284 - hypothetical protein 282 47.62 0 302279..302719 - 146 146291393 - Sputcn32_0285 - hypothetical protein 283 42.38 0 303207..303770 + 187 146291394 - Sputcn32_0286 - NapC/NirT cytochrome c domain-containing protein 284 39.13 -1 303844..304119 - 91 146291395 - Sputcn32_0287 - hypothetical protein 285 47.30 0 304103..304768 - 221 146291396 - Sputcn32_0288 - putative methyltransferase 286 47.76 0 304982..306430 + 482 146291397 - Sputcn32_0289 - signal recognition particle-docking protein FtsY 287 47.14 0 306434..307150 + 238 146291398 - Sputcn32_0290 - cell division ATP-binding protein FtsE 288 45.45 0 307147..308112 + 321 146291399 - Sputcn32_0291 - hypothetical protein 289 45.34 0 308360..309217 + 285 146291400 - Sputcn32_0292 - RNA polymerase factor sigma-32 290 41.25 0 310518..311060 + 180 146291401 - Sputcn32_0293 - fimbrial protein 291 39.52 -1 311981..313354 + 457 146291402 - Sputcn32_0295 - hypothetical protein 292 35.83 -2 313743..314063 + 106 146291403 - Sputcn32_0296 - hypothetical protein 293 43.01 0 314187..315530 + 447 146291404 - Sputcn32_0297 - fimbrial subunit 294 45.86 0 315969..316511 + 180 146291405 - Sputcn32_0298 - fimbrial protein 295 42.25 0 316590..317318 + 242 146291406 - Sputcn32_0299 - pili assembly chaperone 296 45.91 0 317329..319881 + 850 146291407 - Sputcn32_0300 - fimbrial biogenesis outer membrane usher protein 297 44.27 0 319895..321265 + 456 146291408 - Sputcn32_0301 - fimbrial subunit 298 39.18 -1 321427..322161 + 244 146291409 - Sputcn32_0302 - pili assembly chaperone 299 40.02 -1 322756..326346 - 1196 146291410 - Sputcn32_0303 - multi-sensor hybrid histidine kinase 300 37.02 -2 326343..326966 - 207 146291411 - Sputcn32_0304 - two component LuxR family transcriptional regulator 301 37.77 -1 327334..328572 + 412 146291412 - Sputcn32_0305 - response regulator receiver modulated diguanylate phosphodiesterase 302 34.19 -2 328682..329380 + 232 146291413 - Sputcn32_0306 - hypothetical protein 303 46.37 0 329452..330870 - 472 146291414 - Sputcn32_0307 - O-succinylbenzoate-CoA ligase 304 45.21 0 330872..331966 - 364 146291415 - Sputcn32_0308 - O-succinylbenzoate synthase 305 46.51 0 331994..332782 - 262 146291416 - Sputcn32_0309 - alpha/beta hydrolase fold 306 47.15 0 332782..334503 - 573 146291417 - Sputcn32_0310 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 307 38.39 -1 334686..335654 - 322 146291418 - Sputcn32_0311 - LysR family transcriptional regulator 308 35.64 -2 336066..336542 + 158 146291419 - Sputcn32_0312 - hypothetical protein 309 47.53 0 336620..337084 + 154 146291420 - Sputcn32_0313 - formate-dependent nitrite reductase 310 44.98 0 337089..337775 + 228 146291421 - Sputcn32_0314 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 311 43.10 0 337772..338713 + 313 146291422 - Sputcn32_0315 - polysulphide reductase, NrfD 312 43.06 0 338992..339423 - 143 146291423 - Sputcn32_0316 - AsnC family transcriptional regulator 313 46.48 0 339673..340935 + 420 146291424 - Sputcn32_0317 - inner membrane protein YjeH 314 44.44 0 340918..341376 - 152 146291425 - Sputcn32_0318 - hypothetical protein 315 46.52 0 341474..342004 - 176 146291426 - Sputcn32_0319 - hypothetical protein 316 42.80 0 342194..342901 + 235 146291427 - Sputcn32_0320 - hypothetical protein 317 45.70 0 342936..344390 + 484 146291428 - Sputcn32_0321 - Sel1 domain-containing protein 318 45.76 0 344400..344729 - 109 146291429 - Sputcn32_0322 - hypothetical protein 319 47.01 0 345092..346963 + 623 146291430 - Sputcn32_0323 - methyl-accepting chemotaxis sensory transducer 320 44.44 0 347066..348037 - 323 146291431 - Sputcn32_0324 - LysR family transcriptional regulator 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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