version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2449 47.35 0 2859167..2860186 + 339 146293560 - Sputcn32_2464 - von Willebrand factor, type A 2450 46.39 0 2860186..2862177 + 663 146293561 - Sputcn32_2465 - TPR repeat-containing protein 2451 46.41 0 2862171..2863814 + 547 146293562 - Sputcn32_2466 - hypothetical protein 2452 42.20 0 2863890..2864453 + 187 146293563 - Sputcn32_2467 - RNA polymerase sigma factor 2453 40.00 -1 2864446..2865150 + 234 146293564 - Sputcn32_2468 - hypothetical protein 2454 44.24 0 2865265..2866758 + 497 146293565 - Sputcn32_2469 - sodium/proline symporter 2455 43.95 0 2867080..2868417 + 445 146293566 - Sputcn32_2470 - membrane protein involved in aromatic hydrocarbon degradation 2456 45.48 0 2868522..2868908 + 128 146293567 - Sputcn32_2471 - hypothetical protein 2457 42.82 0 2869016..2869732 + 238 146293568 - Sputcn32_2472 - hypothetical protein 2458 45.85 0 2869903..2870925 + 340 146293569 - Sputcn32_2473 - RND family efflux transporter MFP subunit 2459 45.01 0 2870951..2874178 + 1075 146293570 - Sputcn32_2474 - acriflavin resistance protein 2460 42.72 0 2874220..2874432 + 70 146293571 - Sputcn32_2475 - hypothetical protein 2461 46.90 0 2874506..2874844 + 112 146293572 - Sputcn32_2476 - rhodanese domain-containing protein 2462 46.44 0 2875373..2877844 + 823 146293573 - Sputcn32_2477 - peptidase S8 and S53, subtilisin, kexin, sedolisin 2463 42.49 0 2877901..2878446 - 181 146293574 - Sputcn32_2478 - YaeQ family protein 2464 45.94 0 2878541..2879452 - 303 146293575 - Sputcn32_2479 - siroheme synthase 2465 45.91 0 2879597..2879914 - 105 146293576 - Sputcn32_2480 - hypothetical protein 2466 45.36 0 2880148..2881095 - 315 146293577 secF Sputcn32_2481 - preprotein translocase subunit SecF 2467 46.79 0 2881108..2882958 - 616 146293578 secD Sputcn32_2482 - preprotein translocase subunit SecD 2468 43.84 0 2882976..2883308 - 110 146293579 yajC Sputcn32_2483 - preprotein translocase subunit YajC 2469 47.38 0 2883336..2884460 - 374 146293580 tgt Sputcn32_2484 - queuine tRNA-ribosyltransferase 2470 49.04 +1 2884620..2885657 - 345 146293581 - Sputcn32_2485 - S-adenosylmethionine--tRNA-ribosyltransferase-isomerase 2471 42.01 0 2885714..2885932 - 72 146293582 - Sputcn32_2486 - hypothetical protein 2472 43.55 0 2886018..2886653 + 211 146293583 - Sputcn32_2487 - hypothetical protein 2473 43.01 0 2886865..2887536 + 223 146293584 - Sputcn32_2488 - pseudouridylate synthase 2474 38.85 -1 2887593..2888027 - 144 146293585 - Sputcn32_2489 - hypothetical protein 2475 47.25 0 2888350..2889729 + 459 146293586 - Sputcn32_2490 - oxidoreductase domain-containing protein 2476 43.39 0 2889792..2890328 - 178 146293587 - Sputcn32_2491 - NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 2477 43.44 0 2890393..2891619 - 408 146293588 - Sputcn32_2492 - serine/threonine transporter SstT 2478 43.33 0 2891773..2892672 - 299 146293589 - Sputcn32_2493 - putative CheW protein 2479 47.56 0 2892804..2893274 - 156 146293590 - Sputcn32_2494 - dual specificity protein phosphatase 2480 47.90 0 2893339..2894622 - 427 146293591 - Sputcn32_2495 - DEAD/DEAH box helicase domain-containing protein 2481 52.33 +2 2894670..2895227 - 185 146293592 - Sputcn32_2496 - methylated-DNA--protein-cysteine methyltransferase 2482 49.47 +1 2895273..2896964 - 563 146293593 - Sputcn32_2497 - alcohol dehydrogenase 2483 46.72 0 2897449..2899278 + 609 146293594 - Sputcn32_2498 - ABC transporter related 2484 43.40 0 2901539..2902948 - 469 146293595 - Sputcn32_2499 - glutamyl-tRNA synthetase 2485 40.66 -1 2904592..2905614 + 340 146293596 - Sputcn32_2500 - TRAP dicarboxylate transporter, DctP subunit 2486 39.38 -1 2905677..2906321 + 214 146293597 - Sputcn32_2501 - tripartite ATP-independent periplasmic transporter DctQ 2487 45.99 0 2906321..2907718 + 465 146293598 - Sputcn32_2502 - TRAP dicarboxylate transporter, DctM subunit 2488 42.60 0 2907830..2909641 + 603 146293599 - Sputcn32_2503 - integral membrane sensor signal transduction histidine kinase 2489 44.78 0 2909638..2911017 + 459 146293600 - Sputcn32_2504 - two component, sigma54 specific, Fis family transcriptional regulator 2490 43.91 0 2911124..2914195 - 1023 146293601 - Sputcn32_2505 - hypothetical protein 2491 40.07 -1 2914298..2914876 - 192 146293602 - Sputcn32_2506 - thymidine kinase 2492 46.12 0 2915419..2917521 + 700 146293603 - Sputcn32_2507 - hypothetical protein 2493 46.19 0 2917722..2919875 + 717 146293604 - Sputcn32_2508 - peptidyl-dipeptidase Dcp 2494 43.40 0 2919947..2921515 - 522 146293605 - Sputcn32_2509 - Na+/H+ antiporter NhaC 2495 48.98 +1 2921888..2922814 - 308 146293606 - Sputcn32_2510 - electron transfer flavoprotein, alpha subunit 2496 44.00 0 2922815..2923564 - 249 146293607 - Sputcn32_2511 - electron transfer flavoprotein beta-subunit 2497 41.73 0 2923877..2924269 + 130 146293608 - Sputcn32_2512 - histone family protein nucleoid-structuring protein H-NS 2498 45.18 0 2924485..2927574 + 1029 146293609 - Sputcn32_2513 - amidohydrolase 2499 45.33 0 2927574..2928890 + 438 146293610 - Sputcn32_2514 - hypothetical protein 2500 45.93 0 2928967..2929347 + 126 146293611 - Sputcn32_2515 - putative lipoprotein 2501 46.80 0 2929486..2930220 + 244 146293612 - Sputcn32_2516 - hypothetical protein 2502 48.57 +1 2930221..2930850 + 209 146293613 - Sputcn32_2517 - hexapaptide repeat-containing transferase 2503 48.37 0 2931085..2932800 + 571 146293614 - Sputcn32_2518 - prolyl-tRNA synthetase 2504 42.31 0 2932928..2934052 - 374 146293615 - Sputcn32_2519 - patatin 2505 48.41 0 2934347..2934598 + 83 146293616 - Sputcn32_2520 - hypothetical protein 2506 41.49 0 2934747..2935457 + 236 146293617 - Sputcn32_2521 - putative lipoprotein 2507 43.77 0 2935466..2936251 + 261 146293618 - Sputcn32_2522 - hypothetical protein 2508 44.28 0 2936251..2938617 + 788 146293619 - Sputcn32_2523 - protein of unknown function DUF940, membrane lipoprotein putative 2509 37.29 -2 2939478..2939780 - 100 146293620 - Sputcn32_2524 - excinuclease ABC subunit C 2510 40.44 -1 2940654..2942003 - 449 146293621 - Sputcn32_2525 - GAF sensor signal transduction histidine kinase 2511 44.52 0 2942377..2942823 + 148 146293622 - Sputcn32_2526 - copper resistance lipoprotein NlpE 2512 41.11 0 2943787..2945727 - 646 146293623 - Sputcn32_2527 - polysaccharide biosynthesis protein CapD 2513 39.82 -1 2945858..2946412 - 184 146293624 - Sputcn32_2528 - sugar transferase 2514 37.77 -1 2946427..2947350 - 307 146293625 - Sputcn32_2529 - NAD-dependent epimerase/dehydratase 2515 32.17 -2 2947343..2948284 - 313 146293626 - Sputcn32_2530 - glycosyl transferase family protein 2516 30.12 -2 2948311..2949243 - 310 146293627 - Sputcn32_2531 - glycosyl transferase family protein 2517 28.98 -2 2949245..2950393 - 382 146293628 - Sputcn32_2532 - hypothetical protein 2518 30.38 -2 2950386..2951231 - 281 146293629 - Sputcn32_2533 - glycosyl transferase family protein 2519 30.31 -2 2951304..2952131 - 275 146293630 - Sputcn32_2534 - hypothetical protein 2520 29.11 -2 2952196..2953425 - 409 146293631 - Sputcn32_2535 - polysaccharide biosynthesis protein 2521 28.48 -2 2953409..2954500 - 363 146293632 - Sputcn32_2536 - glycosyl transferase, group 1 2522 37.70 -1 2954600..2955148 - 182 146293633 - Sputcn32_2537 - dTDP-4-dehydrorhamnose 3,5-epimerase 2523 44.41 0 2955220..2956095 - 291 146293634 - Sputcn32_2538 - dTDP-4-dehydrorhamnose reductase 2524 40.80 -1 2956092..2956961 - 289 146293635 - Sputcn32_2539 - glucose-1-phosphate thymidylyltransferase 2525 43.80 0 2957032..2958111 - 359 146293636 - Sputcn32_2540 - dTDP-glucose 4,6 dehydratase 2526 40.51 -1 2958327..2959316 - 329 146293637 - Sputcn32_2541 - lipopolysaccharide biosynthesis 2527 37.85 -1 2959508..2959861 - 117 146293638 - Sputcn32_2542 - hypothetical protein 2528 43.04 0 2960057..2962816 - 919 146293639 - Sputcn32_2543 - polysaccharide export protein 2529 41.62 0 2964311..2964817 - 168 146293640 - Sputcn32_2544 - NusG antitermination factor 2530 43.82 0 2965291..2966796 + 501 146293641 - Sputcn32_2545 - amino acid/peptide transporter 2531 40.85 -1 2967397..2968527 - 376 146293642 - Sputcn32_2546 - response regulator receiver protein 2532 43.81 0 2968647..2969429 - 260 146293643 - Sputcn32_2547 - VacJ family lipoprotein 2533 43.39 0 2969660..2971579 + 639 146293644 - Sputcn32_2548 - hypothetical protein 2534 38.78 -1 2971620..2971931 + 103 146293645 - Sputcn32_2549 - FlhB domain-containing protein 2535 45.11 0 2972337..2972735 - 132 146293646 - Sputcn32_2550 - hypothetical protein 2536 41.62 0 2972906..2973400 - 164 146293647 - Sputcn32_2551 - putative CheW protein 2537 41.89 0 2973408..2974400 - 330 146293648 - Sputcn32_2552 - putative CheW protein 2538 44.19 0 2974384..2975175 - 263 146293649 - Sputcn32_2553 - cobyrinic acid a,c-diamide synthase 2539 42.07 0 2975231..2975665 - 144 146293650 - Sputcn32_2554 - hypothetical protein 2540 47.01 0 2975688..2976806 - 372 146293651 - Sputcn32_2555 - chemotaxis-specific methylesterase 2541 45.28 0 2976827..2979052 - 741 146293652 - Sputcn32_2556 - CheA signal transduction histidine kinase 2542 41.33 0 2979068..2979805 - 245 146293653 - Sputcn32_2557 - chemotaxis phosphatase, CheZ 2543 43.75 0 2979819..2980202 - 127 146293654 - Sputcn32_2558 - response regulator receiver protein 2544 43.56 0 2980250..2980963 - 237 146293655 fliA Sputcn32_2559 - flagellar biosynthesis sigma factor 2545 45.01 0 2980956..2981837 - 293 146293656 - Sputcn32_2560 - cobyrinic acid a,c-diamide synthase 2546 46.28 0 2981842..2983224 - 460 146293657 flhF Sputcn32_2561 - flagellar biosynthesis regulator FlhF 2547 45.52 0 2983236..2985335 - 699 146293658 flhA Sputcn32_2562 - flagellar biosynthesis protein FlhA 2548 44.92 0 2985428..2986558 - 376 146293659 flhB Sputcn32_2563 - flagellar biosynthesis protein FlhB 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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