version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2393 52.69 +2 2789606..2790442 + 278 146293504 trpA Sputcn32_2408 - tryptophan synthase subunit alpha 2394 48.84 +1 2790513..2790944 + 143 146293505 - Sputcn32_2409 - hypothetical protein 2395 44.91 0 2791016..2791300 + 94 146293506 - Sputcn32_2410 - hypothetical protein 2396 45.45 0 2791987..2793504 + 505 146293507 - Sputcn32_2411 - L-lysine 6-monooxygenase (NADPH) 2397 47.54 0 2793504..2794193 + 229 146293508 - Sputcn32_2412 - siderophore biosynthesis protein, putative 2398 47.85 0 2794194..2796122 + 642 146293509 - Sputcn32_2413 - IucA/IucC family protein 2399 49.82 +1 2796219..2798432 + 737 146293510 - Sputcn32_2414 - TonB-dependent siderophore receptor 2400 46.22 0 2798577..2799701 + 374 146293511 - Sputcn32_2415 - ferric iron reductase 2401 39.01 -1 2799921..2800466 + 181 146293512 - Sputcn32_2416 - intracellular septation protein A 2402 47.67 0 2800466..2800765 + 99 146293513 - Sputcn32_2417 - YciI-like protein 2403 47.11 0 2800765..2801577 + 270 146293514 - Sputcn32_2418 - exonuclease III 2404 48.86 +1 2801713..2802150 - 145 146293515 - Sputcn32_2419 - hypothetical protein 2405 43.06 0 2802224..2802655 - 143 146293516 - Sputcn32_2420 - hypothetical protein 2406 35.42 -2 2802762..2803193 - 143 146293517 - Sputcn32_2421 - hypothetical protein 2407 47.01 0 2803553..2805007 - 484 146293518 - Sputcn32_2422 - methyl-accepting chemotaxis sensory transducer 2408 48.17 0 2805135..2805626 - 163 146293519 - Sputcn32_2423 - hypothetical protein 2409 50.42 +1 2806013..2808259 - 748 146293520 - Sputcn32_2424 - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding 2410 49.01 +1 2808261..2808764 - 167 146293521 - Sputcn32_2425 - 2Fe-2S iron-sulfur cluster binding domain-containing protein 2411 46.85 0 2808768..2809433 - 221 146293522 - Sputcn32_2426 - hypothetical protein 2412 47.30 0 2809442..2810458 - 338 146293523 - Sputcn32_2427 - hypothetical protein 2413 44.50 0 2810700..2811344 - 214 146293524 - Sputcn32_2428 - beta-lactamase domain-containing protein 2414 44.81 0 2811526..2812815 + 429 146293525 - Sputcn32_2429 - alpha/beta hydrolase fold 2415 43.14 0 2813037..2813444 - 135 146293526 - Sputcn32_2430 - tetraheme cytochrome c 2416 43.77 0 2813463..2815100 - 545 146293527 - Sputcn32_2431 - phenylalanine/histidine ammonia-lyase 2417 48.46 0 2815141..2816694 - 517 146293528 - Sputcn32_2432 - flavocytochrome c 2418 42.37 0 2816860..2818386 + 508 146293529 - Sputcn32_2433 - sigma-54 dependent trancsriptional regulator 2419 42.31 0 2818516..2819685 - 389 146293530 - Sputcn32_2434 - porin 2420 46.59 0 2819934..2822060 - 708 146293531 - Sputcn32_2435 - DNA topoisomerase III 2421 36.43 -2 2822223..2822513 + 96 146293532 - Sputcn32_2436 - hypothetical protein 2422 47.00 0 2822616..2824130 - 504 146293533 - Sputcn32_2437 - amidophosphoribosyltransferase 2423 42.33 0 2824262..2824750 - 162 146293534 - Sputcn32_2438 - colicin V production protein 2424 45.51 0 2824865..2825644 - 259 146293535 - Sputcn32_2439 - sporulation domain-containing protein 2425 47.56 0 2825628..2826899 - 423 146293536 - Sputcn32_2440 - FolC bifunctional protein 2426 45.93 0 2826969..2827754 - 261 146293537 - Sputcn32_2441 - tRNA pseudouridine synthase A 2427 44.14 0 2827857..2831150 - 1097 146293538 - Sputcn32_2442 - hypothetical protein 2428 44.74 0 2831328..2832344 - 338 146293539 - Sputcn32_2443 - aspartate-semialdehyde dehydrogenase 2429 47.21 0 2832347..2833477 - 376 146293540 - Sputcn32_2444 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 2430 47.65 0 2833636..2834871 - 411 146293541 - Sputcn32_2445 - beta-ketoacyl synthase 2431 49.68 +1 2834986..2837028 + 680 146293542 - Sputcn32_2446 - FAD dependent oxidoreductase 2432 51.29 +1 2837125..2837898 - 257 146293543 - Sputcn32_2447 - tRNA/rRNA methyltransferase (SpoU) 2433 48.07 0 2837888..2838172 - 94 146293544 - Sputcn32_2448 - hypothetical protein 2434 49.87 +1 2838177..2839355 - 392 146293545 - Sputcn32_2449 - ATP-NAD/AcoX kinase 2435 51.11 +1 2839406..2840581 - 391 146293546 - Sputcn32_2450 - major facilitator transporter 2436 50.23 +1 2840649..2841743 - 364 146293547 - Sputcn32_2451 - chorismate synthase 2437 46.14 0 2841866..2842810 - 314 146293548 - Sputcn32_2452 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2438 47.83 0 2842892..2843422 + 176 146293549 - Sputcn32_2453 - hypothetical protein 2439 46.92 0 2843500..2843970 - 156 146293550 - Sputcn32_2454 - phosphohistidine phosphatase, SixA 2440 42.04 0 2844140..2846929 + 929 146293551 - Sputcn32_2455 - peptidase M16 domain-containing protein 2441 33.98 -2 2847181..2851497 + 1438 146293552 - Sputcn32_2456 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 2442 43.87 0 2851607..2852071 + 154 146293553 - Sputcn32_2457 - hypothetical protein 2443 42.79 0 2852368..2852568 - 66 146293554 - Sputcn32_2458 - hypothetical protein 2444 46.96 0 2852897..2855017 - 706 146293555 fadJ Sputcn32_2459 - multifunctional fatty acid oxidation complex subunit alpha 2445 50.19 +1 2855023..2856333 - 436 146293556 fadI Sputcn32_2460 - 3-ketoacyl-CoA thiolase 2446 50.79 +1 2856545..2857552 + 335 146293557 - Sputcn32_2461 - ATPase 2447 50.42 +1 2857577..2858530 + 317 146293558 - Sputcn32_2462 - hypothetical protein 2448 49.11 +1 2858610..2859173 + 187 146293559 - Sputcn32_2463 - hypothetical protein 2449 47.35 0 2859167..2860186 + 339 146293560 - Sputcn32_2464 - von Willebrand factor, type A 2450 46.39 0 2860186..2862177 + 663 146293561 - Sputcn32_2465 - TPR repeat-containing protein 2451 46.41 0 2862171..2863814 + 547 146293562 - Sputcn32_2466 - hypothetical protein 2452 42.20 0 2863890..2864453 + 187 146293563 - Sputcn32_2467 - RNA polymerase sigma factor 2453 40.00 -1 2864446..2865150 + 234 146293564 - Sputcn32_2468 - hypothetical protein 2454 44.24 0 2865265..2866758 + 497 146293565 - Sputcn32_2469 - sodium/proline symporter 2455 43.95 0 2867080..2868417 + 445 146293566 - Sputcn32_2470 - membrane protein involved in aromatic hydrocarbon degradation 2456 45.48 0 2868522..2868908 + 128 146293567 - Sputcn32_2471 - hypothetical protein 2457 42.82 0 2869016..2869732 + 238 146293568 - Sputcn32_2472 - hypothetical protein 2458 45.85 0 2869903..2870925 + 340 146293569 - Sputcn32_2473 - RND family efflux transporter MFP subunit 2459 45.01 0 2870951..2874178 + 1075 146293570 - Sputcn32_2474 - acriflavin resistance protein 2460 42.72 0 2874220..2874432 + 70 146293571 - Sputcn32_2475 - hypothetical protein 2461 46.90 0 2874506..2874844 + 112 146293572 - Sputcn32_2476 - rhodanese domain-containing protein 2462 46.44 0 2875373..2877844 + 823 146293573 - Sputcn32_2477 - peptidase S8 and S53, subtilisin, kexin, sedolisin 2463 42.49 0 2877901..2878446 - 181 146293574 - Sputcn32_2478 - YaeQ family protein 2464 45.94 0 2878541..2879452 - 303 146293575 - Sputcn32_2479 - siroheme synthase 2465 45.91 0 2879597..2879914 - 105 146293576 - Sputcn32_2480 - hypothetical protein 2466 45.36 0 2880148..2881095 - 315 146293577 secF Sputcn32_2481 - preprotein translocase subunit SecF 2467 46.79 0 2881108..2882958 - 616 146293578 secD Sputcn32_2482 - preprotein translocase subunit SecD 2468 43.84 0 2882976..2883308 - 110 146293579 yajC Sputcn32_2483 - preprotein translocase subunit YajC 2469 47.38 0 2883336..2884460 - 374 146293580 tgt Sputcn32_2484 - queuine tRNA-ribosyltransferase 2470 49.04 +1 2884620..2885657 - 345 146293581 - Sputcn32_2485 - S-adenosylmethionine--tRNA-ribosyltransferase-isomerase 2471 42.01 0 2885714..2885932 - 72 146293582 - Sputcn32_2486 - hypothetical protein 2472 43.55 0 2886018..2886653 + 211 146293583 - Sputcn32_2487 - hypothetical protein 2473 43.01 0 2886865..2887536 + 223 146293584 - Sputcn32_2488 - pseudouridylate synthase 2474 38.85 -1 2887593..2888027 - 144 146293585 - Sputcn32_2489 - hypothetical protein 2475 47.25 0 2888350..2889729 + 459 146293586 - Sputcn32_2490 - oxidoreductase domain-containing protein 2476 43.39 0 2889792..2890328 - 178 146293587 - Sputcn32_2491 - NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 2477 43.44 0 2890393..2891619 - 408 146293588 - Sputcn32_2492 - serine/threonine transporter SstT 2478 43.33 0 2891773..2892672 - 299 146293589 - Sputcn32_2493 - putative CheW protein 2479 47.56 0 2892804..2893274 - 156 146293590 - Sputcn32_2494 - dual specificity protein phosphatase 2480 47.90 0 2893339..2894622 - 427 146293591 - Sputcn32_2495 - DEAD/DEAH box helicase domain-containing protein 2481 52.33 +2 2894670..2895227 - 185 146293592 - Sputcn32_2496 - methylated-DNA--protein-cysteine methyltransferase 2482 49.47 +1 2895273..2896964 - 563 146293593 - Sputcn32_2497 - alcohol dehydrogenase 2483 46.72 0 2897449..2899278 + 609 146293594 - Sputcn32_2498 - ABC transporter related 2484 43.40 0 2901539..2902948 - 469 146293595 - Sputcn32_2499 - glutamyl-tRNA synthetase 2485 40.66 -1 2904592..2905614 + 340 146293596 - Sputcn32_2500 - TRAP dicarboxylate transporter, DctP subunit 2486 39.38 -1 2905677..2906321 + 214 146293597 - Sputcn32_2501 - tripartite ATP-independent periplasmic transporter DctQ 2487 45.99 0 2906321..2907718 + 465 146293598 - Sputcn32_2502 - TRAP dicarboxylate transporter, DctM subunit 2488 42.60 0 2907830..2909641 + 603 146293599 - Sputcn32_2503 - integral membrane sensor signal transduction histidine kinase 2489 44.78 0 2909638..2911017 + 459 146293600 - Sputcn32_2504 - two component, sigma54 specific, Fis family transcriptional regulator 2490 43.91 0 2911124..2914195 - 1023 146293601 - Sputcn32_2505 - hypothetical protein 2491 40.07 -1 2914298..2914876 - 192 146293602 - Sputcn32_2506 - thymidine kinase 2492 46.12 0 2915419..2917521 + 700 146293603 - Sputcn32_2507 - hypothetical protein 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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