version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1914 46.42 0 2208026..2209141 + 371 146293025 thiH Sputcn32_1927 - thiamine biosynthesis protein ThiH 1915 43.18 0 2209243..2209506 + 87 146293026 - Sputcn32_1928 - methyl-accepting chemotaxis protein 1916 43.35 0 2209512..2211308 + 598 146293027 - Sputcn32_1929 - SrpA-related protein 1917 44.19 0 2211352..2212263 - 303 146293028 - Sputcn32_1930 - LysR family transcriptional regulator 1918 43.61 0 2212370..2214121 - 583 146293029 - Sputcn32_1931 - peptidase M3A and M3B, thimet/oligopeptidase F 1919 48.95 +1 2214114..2215112 - 332 146293030 - Sputcn32_1932 - putative methyltransferase 1920 44.54 0 2215109..2215840 - 243 146293031 - Sputcn32_1933 - putative methyltransferase 1921 43.11 0 2215990..2218803 + 937 146293032 - Sputcn32_1934 - diguanylate cyclase 1922 48.06 0 2218988..2220766 + 592 146293033 aspS Sputcn32_1935 - aspartyl-tRNA synthetase 1923 48.86 +1 2221006..2221752 + 248 146293034 - Sputcn32_1936 - hypothetical protein 1924 47.13 0 2221856..2222377 + 173 146293035 - Sputcn32_1937 - crossover junction endodeoxyribonuclease RuvC 1925 46.28 0 2222374..2222991 + 205 146293036 - Sputcn32_1938 - Holliday junction DNA helicase RuvA 1926 44.08 0 2223005..2224009 + 334 146293037 ruvB Sputcn32_1939 - Holliday junction DNA helicase B 1927 42.39 0 2224931..2227447 + 838 146293038 - Sputcn32_1940 - TonB-dependent receptor 1928 41.91 0 2227617..2228327 + 236 146293039 - Sputcn32_1941 - two component transcriptional regulator 1929 41.76 0 2228523..2229650 + 375 146293040 - Sputcn32_1942 - peptidase M14, carboxypeptidase A 1930 41.82 0 2229662..2229979 + 105 146293041 - Sputcn32_1943 - hypothetical protein 1931 41.49 0 2229976..2230257 + 93 146293042 - Sputcn32_1944 - hypothetical protein 1932 43.63 0 2230560..2231753 + 397 146293043 - Sputcn32_1945 - aromatic amino acid aminotransferase 1933 43.18 0 2231813..2232736 - 307 146293044 - Sputcn32_1946 - protein of unknown function UPF0052 and CofD 1934 38.38 -1 2233067..2233879 + 270 146293045 - Sputcn32_1947 - bax protein, putative 1935 35.87 -2 2233866..2234495 + 209 146293046 - Sputcn32_1948 - hypothetical protein 1936 42.34 0 2234582..2235514 - 310 146293047 - Sputcn32_1949 - PP-loop domain-containing protein 1937 43.30 0 2235603..2236535 - 310 146293048 - Sputcn32_1950 - universal stress protein UspE 1938 40.77 -1 2236711..2237463 - 250 146293049 - Sputcn32_1951 - fumarate/nitrate reduction transcriptional regulator 1939 46.03 0 2237519..2238211 - 230 146293050 - Sputcn32_1952 - hypothetical protein 1940 39.36 -1 2238208..2238456 - 82 146293051 - Sputcn32_1953 - cytochrome oxidase maturation protein, cbb3-type 1941 44.12 0 2238496..2240895 - 799 146293052 - Sputcn32_1954 - heavy metal translocating P-type ATPase 1942 40.00 -1 2240918..2241397 - 159 146293053 - Sputcn32_1955 - hypothetical protein 1943 43.76 0 2241506..2242474 - 322 146293054 - Sputcn32_1956 - cytochrome c oxidase, cbb3-type, subunit III 1944 42.94 0 2242474..2242650 - 58 146293055 - Sputcn32_1957 - Cbb3-type cytochrome oxidase component 1945 44.34 0 2242662..2243288 - 208 146293056 - Sputcn32_1958 - cytochrome c oxidase, cbb3-type, subunit II 1946 45.09 0 2243301..2244737 - 478 146293057 - Sputcn32_1959 - cytochrome c oxidase, cbb3-type, subunit I 1947 38.38 -1 2244994..2245449 + 151 146293058 - Sputcn32_1960 - hypothetical protein 1948 44.19 0 2245675..2248464 - 929 146293059 - Sputcn32_1962 - transposase Tn3 family protein 1949 45.96 0 2248484..2248768 + 94 146293060 - Sputcn32_1963 - transposase IS3/IS911 family protein 1950 50.12 +1 2248819..2249634 + 271 146293061 - Sputcn32_1964 - integrase catalytic subunit 1951 47.99 0 2249791..2250759 - 322 146293062 - Sputcn32_1965 - bile acid:sodium symporter 1952 43.88 0 2250873..2252921 - 682 146293063 - Sputcn32_1966 - heavy metal translocating P-type ATPase 1953 45.96 0 2252978..2253484 - 168 146293064 - Sputcn32_1967 - hypothetical protein 1954 50.46 +1 2253506..2256628 - 1040 146293065 - Sputcn32_1968 - CzcA family heavy metal efflux protein 1955 47.45 0 2256638..2257657 - 339 146293066 - Sputcn32_1969 - biotin/lipoyl attachment domain-containing protein 1956 52.45 +2 2257736..2258980 - 414 146293067 - Sputcn32_1970 - outer membrane efflux protein 1957 46.99 0 2259032..2259397 - 121 146293068 - Sputcn32_1971 - hypothetical protein 1958 48.01 0 2259451..2260356 - 301 146293069 - Sputcn32_1972 - cation efflux system permease, putative 1959 42.37 0 2260379..2260843 + 154 146293070 - Sputcn32_1973 - MerR family transcriptional regulator 1960 45.43 0 2260875..2261783 + 302 146293071 - Sputcn32_1974 - cation diffusion facilitator family transporter 1961 49.24 +1 2261785..2262111 + 108 146293072 - Sputcn32_1975 - hypothetical protein 1962 46.61 0 2262587..2262940 + 117 146293073 - Sputcn32_1977 - hypothetical protein 1963 44.99 0 2263084..2264721 - 545 146293074 - Sputcn32_1978 - sulfatase 1964 45.63 0 2265107..2267098 - 663 146293075 - Sputcn32_1979 - sulfatase 1965 50.14 +1 2267201..2267557 + 118 146293076 - Sputcn32_1980 - diacylglycerol kinase 1966 41.26 0 2267575..2268243 + 222 146293077 - Sputcn32_1981 - two component transcriptional regulator 1967 42.94 0 2268233..2269627 + 464 146293078 - Sputcn32_1982 - integral membrane sensor signal transduction histidine kinase 1968 50.26 +1 2269845..2270813 - 322 146293079 - Sputcn32_1983 - bile acid:sodium symporter 1969 52.38 +2 2271082..2272257 - 391 146293080 - Sputcn32_1984 - cointegrate resolution protein T 1970 51.52 +1 2272473..2272802 + 109 146293081 - Sputcn32_1985 - hypothetical protein 1971 52.33 +2 2272803..2273318 + 171 146293082 - Sputcn32_1986 - hypothetical protein 1972 50.21 +1 2273343..2274302 + 319 146293083 - Sputcn32_1987 - phage integrase family protein 1973 40.03 -1 2274417..2275730 - 437 146293084 - Sputcn32_1988 - response regulator receiver modulated metal dependent phosphohydrolase 1974 41.42 0 2275768..2278848 - 1026 146293085 - Sputcn32_1989 - transposase Tn3 family protein 1975 42.95 0 2278872..2279183 - 103 146293086 - Sputcn32_1990 - plasmid stabilization system protein 1976 39.46 -1 2279183..2279443 - 86 146293087 - Sputcn32_1991 - prevent-host-death family protein 1977 43.16 0 2279613..2280233 + 206 146293088 - Sputcn32_1992 - resolvase domain-containing protein 1978 42.94 0 2280351..2280683 - 110 146293089 - Sputcn32_1993 - TraR/DksA family transcriptional regulator 1979 47.72 0 2280774..2281628 - 284 146293090 - Sputcn32_1994 - UspA domain-containing protein 1980 47.15 0 2281663..2283153 - 496 146293091 - Sputcn32_1995 - sulphate transporter 1981 42.19 0 2283645..2283881 - 78 146293092 - Sputcn32_1996 - response regulator receiver protein 1982 38.96 -1 2284054..2284284 + 76 146293093 - Sputcn32_1997 - hypothetical protein 1983 46.24 0 2284546..2284731 - 61 146293094 - Sputcn32_1998 - hypothetical protein 1984 42.27 0 2285128..2286402 - 424 146293095 - Sputcn32_1999 - inner membrane transport protein YdhC 1985 45.05 0 2286431..2287420 + 329 146293096 - Sputcn32_2000 - putative DNA-binding transcriptional regulator 1986 40.76 -1 2287659..2288318 + 219 146293097 - Sputcn32_2001 - hypothetical protein 1987 43.59 0 2288379..2288768 + 129 146293098 - Sputcn32_2002 - DsrE family protein 1988 42.58 0 2288783..2289139 + 118 146293099 - Sputcn32_2003 - DsrE family protein 1989 41.13 0 2289139..2289420 + 93 146293100 - Sputcn32_2004 - DsrH family protein 1990 43.95 0 2289414..2289752 + 112 146293101 - Sputcn32_2005 - DsrC family protein 1991 39.84 -1 2289858..2289980 - 40 146293102 - Sputcn32_2006 - hypothetical protein 1992 44.91 0 2289998..2291284 - 428 146293103 - Sputcn32_2007 - seryl-tRNA synthetase 1993 38.67 -1 2291303..2291677 - 124 146293104 - Sputcn32_2008 - CrcB protein 1994 46.47 0 2291670..2293001 - 443 146293105 - Sputcn32_2009 - recombination factor protein RarA 1995 39.55 -1 2293010..2293636 - 208 146293106 - Sputcn32_2010 - outer membrane lipoprotein carrier protein LolA 1996 44.44 0 2293713..2296403 - 896 146293107 - Sputcn32_2011 - cell divisionFtsK/SpoIIIE 1997 39.64 -1 2296733..2297239 - 168 146293108 - Sputcn32_2012 - leucine-responsive transcriptional regulator 1998 45.97 0 2297419..2298534 + 371 146293109 - Sputcn32_2013 - alanine dehydrogenase 1999 46.75 0 2298788..2299741 + 317 146293110 - Sputcn32_2014 - thioredoxin reductase 2000 43.14 0 2299991..2300347 - 118 146293111 rplT Sputcn32_2015 - 50S ribosomal protein L20 2001 41.03 -1 2300364..2300558 - 64 146293112 rpmI Sputcn32_2016 - 50S ribosomal protein L35 2002 43.98 0 2300642..2301073 - 143 146293113 - Sputcn32_2017 - translation initiation factor IF-3 2003 45.57 0 2301188..2303116 - 642 146293114 - Sputcn32_2018 - threonyl-tRNA synthetase 2004 40.30 -1 2303517..2303717 + 66 146293115 - Sputcn32_2019 - hypothetical protein 2005 40.63 -1 2303714..2304343 - 209 146293116 - Sputcn32_2020 - riboflavin synthase subunit alpha 2006 45.43 0 2304378..2305757 + 459 146293117 - Sputcn32_2021 - MATE efflux family protein 2007 38.89 -1 2305757..2306008 + 83 146293118 - Sputcn32_2022 - hypothetical protein 2008 39.86 -1 2306746..2307297 + 183 146293119 - Sputcn32_2023 - ecotin precursor 2009 36.23 -2 2307378..2307653 - 91 146293120 - Sputcn32_2024 - hypothetical protein 2010 41.21 0 2307672..2309651 - 659 146293121 - Sputcn32_2025 - ATP-dependent DNA helicase RecQ 2011 40.12 -1 2309863..2310186 - 107 146293122 - Sputcn32_2026 - hypothetical protein 2012 44.61 0 2310441..2312498 + 685 146293123 - Sputcn32_2027 - hypothetical protein 2013 46.04 0 2312593..2313363 - 256 146293124 - Sputcn32_2028 - DTW domain-containing protein 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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