version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1847 38.97 -1 2127473..2128057 - 194 146292958 - Sputcn32_1860 - hypothetical protein 1848 44.67 0 2128192..2128782 + 196 146292959 - Sputcn32_1861 - Smr protein/MutS2 1849 44.86 0 2129059..2129700 + 213 146292960 - Sputcn32_1862 - TetR family transcriptional regulator 1850 45.13 0 2129713..2131992 + 759 146292961 - Sputcn32_1863 - acyl-CoA dehydrogenase 1851 47.36 0 2132146..2133585 - 479 146292962 - Sputcn32_1864 - pyruvate kinase 1852 42.81 0 2133770..2134624 - 284 146292963 - Sputcn32_1865 - DNA-binding transcriptional regulator HexR 1853 46.10 0 2134935..2136407 + 490 146292964 - Sputcn32_1866 - glucose-6-phosphate 1-dehydrogenase 1854 47.50 0 2136417..2137115 + 232 146292965 - Sputcn32_1867 - 6-phosphogluconolactonase 1855 49.78 +1 2137125..2138966 + 613 146292966 - Sputcn32_1868 - phosphogluconate dehydratase 1856 46.05 0 2138944..2139627 + 227 146292967 - Sputcn32_1869 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 1857 48.30 0 2139817..2141166 - 449 146292968 - Sputcn32_1870 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 1858 46.09 0 2141192..2141779 - 195 146292969 - Sputcn32_1871 - hypothetical protein 1859 46.09 0 2142062..2143276 - 404 146292970 - Sputcn32_1872 - aminotransferase AlaT 1860 42.95 0 2144062..2145444 + 460 146292971 - Sputcn32_1873 - Na+/H+ antiporter NhaC 1861 38.08 -1 2145658..2146479 + 273 146292972 - Sputcn32_1874 - hypothetical protein 1862 42.25 0 2146661..2147221 - 186 146292973 - Sputcn32_1875 - elongation factor P 1863 42.83 0 2147266..2148444 - 392 146292974 - Sputcn32_1876 - hypothetical protein 1864 43.75 0 2148554..2149081 - 175 146292975 - Sputcn32_1877 - flavodoxin FldA 1865 45.05 0 2149138..2149410 - 90 146292976 - Sputcn32_1878 - LexA regulated protein 1866 40.09 -1 2149422..2149643 - 73 146292977 - Sputcn32_1879 - hypothetical protein 1867 45.05 0 2149745..2150521 - 258 146292978 - Sputcn32_1880 - alpha/beta hydrolase fold 1868 43.55 0 2150804..2151361 + 185 146292979 - Sputcn32_1881 - replication initiation regulator SeqA 1869 47.25 0 2151408..2153060 + 550 146292980 - Sputcn32_1882 - phosphoglucomutase 1870 46.04 0 2153144..2153623 - 159 146292981 - Sputcn32_1883 - peptide methionine sulfoxide reductase 1871 46.57 0 2153920..2154954 + 344 146292982 - Sputcn32_1884 - succinylglutamate desuccinylase 1872 48.85 +1 2155117..2156295 + 392 146292983 - Sputcn32_1885 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) 1873 50.00 +1 2156299..2157276 + 325 146292984 - Sputcn32_1886 - transketolase, central region 1874 49.85 +1 2157286..2158908 + 540 146292985 - Sputcn32_1887 - dihydrolipoamide acetyltransferase 1875 49.22 +1 2159041..2160123 + 360 146292986 - Sputcn32_1888 - quinolinate synthetase 1876 45.70 0 2160282..2161292 - 336 146292987 - Sputcn32_1889 - glyceraldehyde-3-phosphate dehydrogenase, type I 1877 40.43 -1 2161499..2162344 - 281 146292988 - Sputcn32_1890 - hypothetical protein 1878 44.98 0 2162590..2164023 + 477 146292989 - Sputcn32_1891 - glyceraldehyde-3-phosphate dehydrogenase 1879 40.41 -1 2165570..2167024 + 484 146292990 - Sputcn32_1892 - peptidoglycan binding domain-containing protein 1880 45.72 0 2167148..2167696 + 182 146292991 - Sputcn32_1893 - hypothetical protein 1881 38.93 -1 2167647..2168093 - 148 146292992 - Sputcn32_1894 - hypothetical protein 1882 43.40 0 2168383..2168670 + 95 146292993 - Sputcn32_1895 - ribosomal protein L25 1883 44.21 0 2168810..2172727 - 1305 146292994 - Sputcn32_1896 - hypothetical protein 1884 42.28 0 2172724..2174589 - 621 146292995 - Sputcn32_1897 - surface antigen (D15) 1885 45.25 0 2174698..2175729 + 343 146292996 - Sputcn32_1898 - peptidase T2, asparaginase 2 1886 44.36 0 2175852..2176268 + 138 146292997 - Sputcn32_1899 - signal transduction protein 1887 46.70 0 2176363..2180244 + 1293 146292998 - Sputcn32_1900 - ATP-dependent helicase HrpA 1888 45.28 0 2180768..2180926 + 52 146292999 - Sputcn32_1901 - periplasmic nitrate reductase NapE 1889 41.09 -1 2180970..2181227 + 85 146293000 - Sputcn32_1902 - NapD family protein 1890 46.22 0 2181230..2183719 + 829 146293001 - Sputcn32_1903 - nitrate reductase 1891 41.77 0 2183730..2184215 + 161 146293002 - Sputcn32_1904 - nitrate reductase cytochrome c-type subunit (NapB) 1892 46.43 0 2184224..2184811 + 195 146293003 - Sputcn32_1905 - NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome 1893 44.36 0 2184956..2185336 + 126 146293004 - Sputcn32_1906 - hypothetical protein 1894 41.88 0 2185333..2185683 + 116 146293005 - Sputcn32_1907 - hypothetical protein 1895 46.25 0 2185771..2186931 + 386 146293006 - Sputcn32_1908 - cupin 4 family protein 1896 43.32 0 2187050..2188441 - 463 146293007 - Sputcn32_1909 - sodium/sulphate symporter 1897 45.69 0 2188522..2189322 + 266 146293008 - Sputcn32_1910 - helix-turn-helix domain-containing protein 1898 46.94 0 2189376..2189669 + 97 146293009 - Sputcn32_1911 - YCII-related 1899 47.72 0 2190283..2191248 + 321 146293010 - Sputcn32_1912 - hypothetical protein 1900 45.11 0 2191317..2191766 - 149 146293011 - Sputcn32_1913 - alkylhydroperoxidase 1901 44.93 0 2191804..2192700 - 298 146293012 - Sputcn32_1914 - helix-turn-helix domain-containing protein 1902 42.87 0 2192945..2193814 - 289 146293013 - Sputcn32_1915 - UspA domain-containing protein 1903 39.97 -1 2194131..2194868 + 245 146293014 - Sputcn32_1916 - hypothetical protein 1904 42.08 0 2195123..2198209 + 1028 146293015 - Sputcn32_1917 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 1905 44.19 0 2198330..2198863 + 177 146293016 - Sputcn32_1918 - NUDIX hydrolase 1906 44.44 0 2198919..2199413 + 164 146293017 - Sputcn32_1919 - DTW domain-containing protein 1907 40.06 -1 2199464..2200147 - 227 146293018 - Sputcn32_1920 - hemolysin III family channel protein 1908 43.53 0 2200525..2201613 + 362 146293019 - Sputcn32_1921 - hypothetical protein 1909 50.26 +1 2202079..2204217 + 712 146293020 - Sputcn32_1922 - thiamine biosynthesis protein ThiC 1910 48.59 +1 2204250..2206163 + 637 146293021 - Sputcn32_1923 - thiamine-phosphate pyrophosphorylase 1911 48.79 +1 2206147..2207058 + 303 146293022 - Sputcn32_1924 - UBA/THIF-type NAD/FAD binding protein 1912 46.08 0 2207060..2207263 + 67 146293023 - Sputcn32_1925 - thiamine biosynthesis protein ThiS 1913 52.03 +1 2207265..2208029 + 254 146293024 thiG Sputcn32_1926 - thiazole synthase 1914 46.42 0 2208026..2209141 + 371 146293025 thiH Sputcn32_1927 - thiamine biosynthesis protein ThiH 1915 43.18 0 2209243..2209506 + 87 146293026 - Sputcn32_1928 - methyl-accepting chemotaxis protein 1916 43.35 0 2209512..2211308 + 598 146293027 - Sputcn32_1929 - SrpA-related protein 1917 44.19 0 2211352..2212263 - 303 146293028 - Sputcn32_1930 - LysR family transcriptional regulator 1918 43.61 0 2212370..2214121 - 583 146293029 - Sputcn32_1931 - peptidase M3A and M3B, thimet/oligopeptidase F 1919 48.95 +1 2214114..2215112 - 332 146293030 - Sputcn32_1932 - putative methyltransferase 1920 44.54 0 2215109..2215840 - 243 146293031 - Sputcn32_1933 - putative methyltransferase 1921 43.11 0 2215990..2218803 + 937 146293032 - Sputcn32_1934 - diguanylate cyclase 1922 48.06 0 2218988..2220766 + 592 146293033 aspS Sputcn32_1935 - aspartyl-tRNA synthetase 1923 48.86 +1 2221006..2221752 + 248 146293034 - Sputcn32_1936 - hypothetical protein 1924 47.13 0 2221856..2222377 + 173 146293035 - Sputcn32_1937 - crossover junction endodeoxyribonuclease RuvC 1925 46.28 0 2222374..2222991 + 205 146293036 - Sputcn32_1938 - Holliday junction DNA helicase RuvA 1926 44.08 0 2223005..2224009 + 334 146293037 ruvB Sputcn32_1939 - Holliday junction DNA helicase B 1927 42.39 0 2224931..2227447 + 838 146293038 - Sputcn32_1940 - TonB-dependent receptor 1928 41.91 0 2227617..2228327 + 236 146293039 - Sputcn32_1941 - two component transcriptional regulator 1929 41.76 0 2228523..2229650 + 375 146293040 - Sputcn32_1942 - peptidase M14, carboxypeptidase A 1930 41.82 0 2229662..2229979 + 105 146293041 - Sputcn32_1943 - hypothetical protein 1931 41.49 0 2229976..2230257 + 93 146293042 - Sputcn32_1944 - hypothetical protein 1932 43.63 0 2230560..2231753 + 397 146293043 - Sputcn32_1945 - aromatic amino acid aminotransferase 1933 43.18 0 2231813..2232736 - 307 146293044 - Sputcn32_1946 - protein of unknown function UPF0052 and CofD 1934 38.38 -1 2233067..2233879 + 270 146293045 - Sputcn32_1947 - bax protein, putative 1935 35.87 -2 2233866..2234495 + 209 146293046 - Sputcn32_1948 - hypothetical protein 1936 42.34 0 2234582..2235514 - 310 146293047 - Sputcn32_1949 - PP-loop domain-containing protein 1937 43.30 0 2235603..2236535 - 310 146293048 - Sputcn32_1950 - universal stress protein UspE 1938 40.77 -1 2236711..2237463 - 250 146293049 - Sputcn32_1951 - fumarate/nitrate reduction transcriptional regulator 1939 46.03 0 2237519..2238211 - 230 146293050 - Sputcn32_1952 - hypothetical protein 1940 39.36 -1 2238208..2238456 - 82 146293051 - Sputcn32_1953 - cytochrome oxidase maturation protein, cbb3-type 1941 44.12 0 2238496..2240895 - 799 146293052 - Sputcn32_1954 - heavy metal translocating P-type ATPase 1942 40.00 -1 2240918..2241397 - 159 146293053 - Sputcn32_1955 - hypothetical protein 1943 43.76 0 2241506..2242474 - 322 146293054 - Sputcn32_1956 - cytochrome c oxidase, cbb3-type, subunit III 1944 42.94 0 2242474..2242650 - 58 146293055 - Sputcn32_1957 - Cbb3-type cytochrome oxidase component 1945 44.34 0 2242662..2243288 - 208 146293056 - Sputcn32_1958 - cytochrome c oxidase, cbb3-type, subunit II 1946 45.09 0 2243301..2244737 - 478 146293057 - Sputcn32_1959 - cytochrome c oxidase, cbb3-type, subunit I 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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