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Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1815 45.93 0 2089072..2090055 + 327 146292926 pheS Sputcn32_1828 - phenylalanyl-tRNA synthetase subunit alpha 1816 48.16 0 2090071..2092458 + 795 146292927 pheT Sputcn32_1829 - phenylalanyl-tRNA synthetase subunit beta 1817 46.80 0 2092462..2092758 + 98 146292928 - Sputcn32_1830 - integration host factor, alpha subunit 1818 45.12 0 2092855..2093796 + 313 146292929 - Sputcn32_1831 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1819 46.84 0 2093933..2094280 - 115 146292930 - Sputcn32_1832 - hydrogenase nickel insertion protein HypA 1820 48.38 0 2094280..2095296 - 338 146292931 - Sputcn32_1833 - hydrogenase expression/formation protein HypE 1821 49.47 +1 2095289..2096428 - 379 146292932 - Sputcn32_1834 - hydrogenase expression/formation protein HypD 1822 42.28 0 2096490..2096735 - 81 146292933 - Sputcn32_1835 - hydrogenase assembly chaperone hypC/hupF 1823 46.10 0 2096735..2097517 - 260 146292934 - Sputcn32_1836 - hydrogenase accessory protein HypB 1824 47.37 0 2097792..2100491 - 899 146292935 - Sputcn32_1837 - CoA-binding domain-containing protein 1825 39.63 -1 2100693..2101280 + 195 146292936 - Sputcn32_1838 - hypothetical protein 1826 45.38 0 2101406..2103016 - 536 146292937 - Sputcn32_1839 - ABC transporter related 1827 45.37 0 2103228..2104016 + 262 146292938 - Sputcn32_1840 - hypothetical protein 1828 44.29 0 2104218..2106308 - 696 146292939 - Sputcn32_1841 - TonB-dependent siderophore receptor 1829 43.08 0 2106437..2107606 + 389 146292940 - Sputcn32_1842 - peptidase 1830 41.67 0 2107606..2108073 + 155 146292941 - Sputcn32_1843 - hypothetical protein 1831 45.48 0 2108124..2108765 - 213 146292942 - Sputcn32_1844 - endonuclease III 1832 47.07 0 2108781..2109479 - 232 146292943 - Sputcn32_1845 - SoxR-reducing system protein RsxE 1833 44.66 0 2109472..2110098 - 208 146292944 - Sputcn32_1846 - electron transport complex protein RnfG 1834 47.62 0 2110165..2111214 - 349 146292945 - Sputcn32_1847 - electron transport complex, RnfABCDGE type, D subunit 1835 49.20 +1 2111280..2113661 - 793 146292946 - Sputcn32_1848 - electron transport complex protein RnfC 1836 47.17 0 2113655..2114254 - 199 146292947 - Sputcn32_1849 - electron transport complex protein RnfB 1837 44.73 0 2114256..2114834 - 192 146292948 - Sputcn32_1850 - Na(+)-translocating NADH-quinone reductase subunit E 1838 41.21 0 2114960..2116864 - 634 146292949 - Sputcn32_1851 - diguanylate cyclase/phosphodiesterase 1839 46.74 0 2118525..2120531 + 668 146292950 - Sputcn32_1852 - excinuclease ABC subunit B 1840 47.62 0 2120613..2121179 - 188 146292951 - Sputcn32_1853 - rhomboid family protein 1841 45.53 0 2121206..2121943 - 245 146292952 - Sputcn32_1854 - queuosine biosynthesis protein QueC 1842 47.23 0 2122115..2122783 + 222 146292953 - Sputcn32_1855 - radical activating enzyme 1843 44.38 0 2123520..2124008 + 162 146292954 - Sputcn32_1856 - hypothetical protein 1844 40.77 -1 2124153..2124488 + 111 146292955 - Sputcn32_1857 - hypothetical protein 1845 42.81 0 2124679..2126862 + 727 146292956 - Sputcn32_1858 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 1846 42.68 0 2126953..2127444 - 163 146292957 - Sputcn32_1859 - SecC motif-containing protein 1847 38.97 -1 2127473..2128057 - 194 146292958 - Sputcn32_1860 - hypothetical protein 1848 44.67 0 2128192..2128782 + 196 146292959 - Sputcn32_1861 - Smr protein/MutS2 1849 44.86 0 2129059..2129700 + 213 146292960 - Sputcn32_1862 - TetR family transcriptional regulator 1850 45.13 0 2129713..2131992 + 759 146292961 - Sputcn32_1863 - acyl-CoA dehydrogenase 1851 47.36 0 2132146..2133585 - 479 146292962 - Sputcn32_1864 - pyruvate kinase 1852 42.81 0 2133770..2134624 - 284 146292963 - Sputcn32_1865 - DNA-binding transcriptional regulator HexR 1853 46.10 0 2134935..2136407 + 490 146292964 - Sputcn32_1866 - glucose-6-phosphate 1-dehydrogenase 1854 47.50 0 2136417..2137115 + 232 146292965 - Sputcn32_1867 - 6-phosphogluconolactonase 1855 49.78 +1 2137125..2138966 + 613 146292966 - Sputcn32_1868 - phosphogluconate dehydratase 1856 46.05 0 2138944..2139627 + 227 146292967 - Sputcn32_1869 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 1857 48.30 0 2139817..2141166 - 449 146292968 - Sputcn32_1870 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 1858 46.09 0 2141192..2141779 - 195 146292969 - Sputcn32_1871 - hypothetical protein 1859 46.09 0 2142062..2143276 - 404 146292970 - Sputcn32_1872 - aminotransferase AlaT 1860 42.95 0 2144062..2145444 + 460 146292971 - Sputcn32_1873 - Na+/H+ antiporter NhaC 1861 38.08 -1 2145658..2146479 + 273 146292972 - Sputcn32_1874 - hypothetical protein 1862 42.25 0 2146661..2147221 - 186 146292973 - Sputcn32_1875 - elongation factor P 1863 42.83 0 2147266..2148444 - 392 146292974 - Sputcn32_1876 - hypothetical protein 1864 43.75 0 2148554..2149081 - 175 146292975 - Sputcn32_1877 - flavodoxin FldA 1865 45.05 0 2149138..2149410 - 90 146292976 - Sputcn32_1878 - LexA regulated protein 1866 40.09 -1 2149422..2149643 - 73 146292977 - Sputcn32_1879 - hypothetical protein 1867 45.05 0 2149745..2150521 - 258 146292978 - Sputcn32_1880 - alpha/beta hydrolase fold 1868 43.55 0 2150804..2151361 + 185 146292979 - Sputcn32_1881 - replication initiation regulator SeqA 1869 47.25 0 2151408..2153060 + 550 146292980 - Sputcn32_1882 - phosphoglucomutase 1870 46.04 0 2153144..2153623 - 159 146292981 - Sputcn32_1883 - peptide methionine sulfoxide reductase 1871 46.57 0 2153920..2154954 + 344 146292982 - Sputcn32_1884 - succinylglutamate desuccinylase 1872 48.85 +1 2155117..2156295 + 392 146292983 - Sputcn32_1885 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) 1873 50.00 +1 2156299..2157276 + 325 146292984 - Sputcn32_1886 - transketolase, central region 1874 49.85 +1 2157286..2158908 + 540 146292985 - Sputcn32_1887 - dihydrolipoamide acetyltransferase 1875 49.22 +1 2159041..2160123 + 360 146292986 - Sputcn32_1888 - quinolinate synthetase 1876 45.70 0 2160282..2161292 - 336 146292987 - Sputcn32_1889 - glyceraldehyde-3-phosphate dehydrogenase, type I 1877 40.43 -1 2161499..2162344 - 281 146292988 - Sputcn32_1890 - hypothetical protein 1878 44.98 0 2162590..2164023 + 477 146292989 - Sputcn32_1891 - glyceraldehyde-3-phosphate dehydrogenase 1879 40.41 -1 2165570..2167024 + 484 146292990 - Sputcn32_1892 - peptidoglycan binding domain-containing protein 1880 45.72 0 2167148..2167696 + 182 146292991 - Sputcn32_1893 - hypothetical protein 1881 38.93 -1 2167647..2168093 - 148 146292992 - Sputcn32_1894 - hypothetical protein 1882 43.40 0 2168383..2168670 + 95 146292993 - Sputcn32_1895 - ribosomal protein L25 1883 44.21 0 2168810..2172727 - 1305 146292994 - Sputcn32_1896 - hypothetical protein 1884 42.28 0 2172724..2174589 - 621 146292995 - Sputcn32_1897 - surface antigen (D15) 1885 45.25 0 2174698..2175729 + 343 146292996 - Sputcn32_1898 - peptidase T2, asparaginase 2 1886 44.36 0 2175852..2176268 + 138 146292997 - Sputcn32_1899 - signal transduction protein 1887 46.70 0 2176363..2180244 + 1293 146292998 - Sputcn32_1900 - ATP-dependent helicase HrpA 1888 45.28 0 2180768..2180926 + 52 146292999 - Sputcn32_1901 - periplasmic nitrate reductase NapE 1889 41.09 -1 2180970..2181227 + 85 146293000 - Sputcn32_1902 - NapD family protein 1890 46.22 0 2181230..2183719 + 829 146293001 - Sputcn32_1903 - nitrate reductase 1891 41.77 0 2183730..2184215 + 161 146293002 - Sputcn32_1904 - nitrate reductase cytochrome c-type subunit (NapB) 1892 46.43 0 2184224..2184811 + 195 146293003 - Sputcn32_1905 - NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome 1893 44.36 0 2184956..2185336 + 126 146293004 - Sputcn32_1906 - hypothetical protein 1894 41.88 0 2185333..2185683 + 116 146293005 - Sputcn32_1907 - hypothetical protein 1895 46.25 0 2185771..2186931 + 386 146293006 - Sputcn32_1908 - cupin 4 family protein 1896 43.32 0 2187050..2188441 - 463 146293007 - Sputcn32_1909 - sodium/sulphate symporter 1897 45.69 0 2188522..2189322 + 266 146293008 - Sputcn32_1910 - helix-turn-helix domain-containing protein 1898 46.94 0 2189376..2189669 + 97 146293009 - Sputcn32_1911 - YCII-related 1899 47.72 0 2190283..2191248 + 321 146293010 - Sputcn32_1912 - hypothetical protein 1900 45.11 0 2191317..2191766 - 149 146293011 - Sputcn32_1913 - alkylhydroperoxidase 1901 44.93 0 2191804..2192700 - 298 146293012 - Sputcn32_1914 - helix-turn-helix domain-containing protein 1902 42.87 0 2192945..2193814 - 289 146293013 - Sputcn32_1915 - UspA domain-containing protein 1903 39.97 -1 2194131..2194868 + 245 146293014 - Sputcn32_1916 - hypothetical protein 1904 42.08 0 2195123..2198209 + 1028 146293015 - Sputcn32_1917 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 1905 44.19 0 2198330..2198863 + 177 146293016 - Sputcn32_1918 - NUDIX hydrolase 1906 44.44 0 2198919..2199413 + 164 146293017 - Sputcn32_1919 - DTW domain-containing protein 1907 40.06 -1 2199464..2200147 - 227 146293018 - Sputcn32_1920 - hemolysin III family channel protein 1908 43.53 0 2200525..2201613 + 362 146293019 - Sputcn32_1921 - hypothetical protein 1909 50.26 +1 2202079..2204217 + 712 146293020 - Sputcn32_1922 - thiamine biosynthesis protein ThiC 1910 48.59 +1 2204250..2206163 + 637 146293021 - Sputcn32_1923 - thiamine-phosphate pyrophosphorylase 1911 48.79 +1 2206147..2207058 + 303 146293022 - Sputcn32_1924 - UBA/THIF-type NAD/FAD binding protein 1912 46.08 0 2207060..2207263 + 67 146293023 - Sputcn32_1925 - thiamine biosynthesis protein ThiS 1913 52.03 +1 2207265..2208029 + 254 146293024 thiG Sputcn32_1926 - thiazole synthase 1914 46.42 0 2208026..2209141 + 371 146293025 thiH Sputcn32_1927 - thiamine biosynthesis protein ThiH 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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