version 1.0
Shewanella putrefaciens CN-32, complete genome - 1..4659220 3972 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1213 48.35 0 1363996..1364994 + 332 146292324 - Sputcn32_1221 - permease 1214 42.19 0 1365007..1365243 + 78 146292325 - Sputcn32_1222 - redox-active disulfide protein 2 1215 49.55 +1 1365382..1366392 + 336 146292326 - Sputcn32_1223 - glyceraldehyde-3-phosphate dehydrogenase 1216 49.23 +1 1366398..1367636 + 412 146292327 - Sputcn32_1224 - major facilitator transporter 1217 40.94 -1 1367768..1368043 + 91 146292328 - Sputcn32_1225 - hypothetical protein 1218 45.81 0 1368484..1369974 + 496 146292329 - Sputcn32_1226 - sulphate transporter 1219 49.59 +1 1370008..1370862 + 284 146292330 - Sputcn32_1227 - UspA domain-containing protein 1220 46.52 0 1370901..1371173 - 90 146292331 - Sputcn32_1228 - hypothetical protein 1221 45.53 0 1371649..1372140 - 163 146292332 smpB Sputcn32_1229 - SsrA-binding protein 1222 38.13 -1 1372415..1372852 + 145 146292333 - Sputcn32_1230 - cyclase/dehydrase 1223 43.84 0 1372842..1373174 + 110 146292334 - Sputcn32_1231 - hypothetical protein 1224 42.67 0 1373253..1373777 - 174 146292335 - Sputcn32_1232 - SmpA/OmlA domain-containing protein 1225 45.33 0 1374352..1375143 + 263 146292336 - Sputcn32_1233 - uroporphyrin-III C/tetrapyrrole methyltransferase 1226 37.09 -2 1375189..1375401 + 70 146292337 - Sputcn32_1234 - hypothetical protein 1227 39.91 -1 1375465..1377198 + 577 146292338 - Sputcn32_1235 - diguanylate cyclase 1228 44.58 0 1377460..1379229 + 589 146292339 - Sputcn32_1236 - potassium efflux system protein 1229 42.74 0 1379302..1381746 - 814 146292340 - Sputcn32_1237 - TonB-dependent receptor, plug 1230 46.47 0 1382530..1384257 + 575 146292341 - Sputcn32_1238 - malate synthase 1231 47.54 0 1384392..1385714 + 440 146292342 - Sputcn32_1239 - isocitrate lyase 1232 43.63 0 1386107..1386475 + 122 146292343 - Sputcn32_1240 - thioesterase superfamily protein 1233 46.85 0 1386543..1386764 - 73 146292344 - Sputcn32_1241 - hypothetical protein 1234 43.88 0 1386855..1388153 - 432 146292345 - Sputcn32_1242 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1235 37.90 -1 1388531..1388902 - 123 146292346 - Sputcn32_1243 - hypothetical protein 1236 44.82 0 1389665..1390813 - 382 146292347 - Sputcn32_1244 - iron-containing alcohol dehydrogenase 1237 43.40 0 1391151..1391627 + 158 146292348 - Sputcn32_1245 - MarR family transcriptional regulator 1238 41.55 0 1391723..1392355 - 210 146292349 - Sputcn32_1246 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 1239 45.76 0 1392868..1395105 + 745 146292350 - Sputcn32_1247 - 4-alpha-glucanotransferase 1240 46.43 0 1395170..1397407 + 745 146292351 - Sputcn32_1248 - glycogen branching enzyme 1241 45.97 0 1397404..1399611 + 735 146292352 - Sputcn32_1249 - glycogen debranching enzyme GlgX 1242 46.70 0 1399614..1402142 + 842 146292353 - Sputcn32_1250 - glycogen/starch/alpha-glucan phosphorylase 1243 46.40 0 1402193..1403455 + 420 146292354 - Sputcn32_1251 - glucose-1-phosphate adenylyltransferase 1244 45.21 0 1403526..1405133 + 535 146292355 - Sputcn32_1252 - starch synthase 1245 43.47 0 1405242..1408298 + 1018 146292356 - Sputcn32_1253 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 1246 48.96 +1 1408419..1409864 + 481 146292357 - Sputcn32_1254 - DEAD/DEAH box helicase domain-containing protein 1247 43.67 0 1409979..1411061 + 360 146292358 - Sputcn32_1255 - cobalamin synthesis protein, P47K 1248 41.60 0 1411075..1411836 - 253 146292359 - Sputcn32_1256 - ABC transporter, periplasmic substrate-binding protein, putative 1249 40.61 -1 1412201..1412722 + 173 146292360 - Sputcn32_1257 - hypothetical protein 1250 45.72 0 1412801..1414342 - 513 146292361 - Sputcn32_1258 - major facilitator transporter 1251 45.48 0 1414742..1416091 + 449 146292362 - Sputcn32_1259 - multi anti extrusion protein MatE 1252 44.38 0 1416336..1417847 + 503 146292363 - Sputcn32_1260 - hypothetical protein 1253 47.13 0 1417967..1418437 + 156 146292364 - Sputcn32_1261 - hypothetical protein 1254 43.00 0 1418726..1419139 + 137 146292365 - Sputcn32_1262 - hypothetical protein 1255 38.23 -1 1419270..1420004 + 244 146292366 - Sputcn32_1263 - hypothetical protein 1256 45.09 0 1420167..1421144 + 325 146292367 - Sputcn32_1264 - hypothetical protein 1257 38.66 -1 1421491..1422354 + 287 146292368 - Sputcn32_1265 - putative esterase 1258 43.98 0 1422460..1422957 + 165 146292369 - Sputcn32_1266 - GCN5-related N-acetyltransferase 1259 42.58 0 1423427..1424605 - 392 146292370 - Sputcn32_1267 - ATPase central domain-containing protein 1260 47.19 0 1425170..1425739 - 189 146292371 - Sputcn32_1268 - hypothetical protein 1261 49.39 +1 1425741..1427135 - 464 146292372 - Sputcn32_1269 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1262 49.06 +1 1427146..1427889 - 247 146292373 - Sputcn32_1270 - hypothetical protein 1263 45.99 0 1428202..1431006 - 934 146292374 - Sputcn32_1271 - FAD linked oxidase domain-containing protein 1264 48.42 0 1431086..1432729 - 547 146292375 - Sputcn32_1272 - L-lactate permease 1265 47.63 0 1433576..1434505 - 309 146292376 - Sputcn32_1273 - NAD(+) kinase 1266 46.05 0 1434555..1435175 + 206 146292377 - Sputcn32_1274 - GrpE protein 1267 47.67 0 1435280..1437148 - 622 146292378 - Sputcn32_1275 - 1-deoxy-D-xylulose-5-phosphate synthase 1268 45.92 0 1437170..1438051 - 293 146292379 - Sputcn32_1276 - polyprenyl synthetase 1269 43.33 0 1438054..1438293 - 79 146292380 - Sputcn32_1277 - exodeoxyribonuclease VII, small subunit 1270 41.80 0 1438605..1439372 + 255 146292381 - Sputcn32_1278 - flagellar motor protein PomA 1271 46.28 0 1439376..1440302 + 308 146292382 motB Sputcn32_1279 - flagellar motor protein MotB 1272 43.51 0 1440516..1441970 + 484 146292383 - Sputcn32_1280 - thiamine biosynthesis protein ThiI 1273 40.42 -1 1442056..1442295 - 79 146292384 - Sputcn32_1281 - hypothetical protein 1274 45.39 0 1442473..1443384 + 303 146292385 - Sputcn32_1282 - DNA-binding transcriptional activator GcvA 1275 49.19 +1 1443365..1444039 + 224 146292386 - Sputcn32_1283 - hypothetical protein 1276 47.58 0 1444068..1444460 + 130 146292387 - Sputcn32_1284 - hypothetical protein 1277 46.04 0 1444638..1445723 + 361 146292388 - Sputcn32_1285 - putative RNA 2'-O-ribose methyltransferase 1278 46.29 0 1445822..1446832 - 336 146292389 - Sputcn32_1286 - isocitrate dehydrogenase 1279 43.67 0 1447086..1449911 + 941 146292390 - Sputcn32_1287 - peptidase S9 prolyl oligopeptidase 1280 39.20 -1 1449994..1450419 - 141 146292391 - Sputcn32_1288 - hypothetical protein 1281 46.39 0 1450530..1451318 - 262 146292392 xni Sputcn32_1289 - exonuclease IX 1282 43.14 0 1451340..1452695 - 451 146292393 - Sputcn32_1290 - hypothetical protein 1283 40.33 -1 1452751..1454307 - 518 146292394 - Sputcn32_1291 - diguanylate cyclase 1284 40.84 -1 1454460..1456631 - 723 146292395 - Sputcn32_1292 - TPR repeat-containing protein 1285 42.72 0 1456786..1458597 + 603 146292396 - Sputcn32_1293 - peptidase M61 domain-containing protein 1286 42.19 0 1458679..1459593 - 304 146292397 rdgC Sputcn32_1294 - recombination associated protein 1287 43.85 0 1459885..1460835 + 316 146292398 - Sputcn32_1295 - porin 1288 48.26 0 1461022..1461711 + 229 146292399 - Sputcn32_1296 - two component transcriptional regulator 1289 44.73 0 1461791..1463089 + 432 146292400 - Sputcn32_1297 - PAS/PAC sensor signal transduction histidine kinase 1290 42.90 0 1463316..1464287 + 323 146292401 - Sputcn32_1298 - phosphate binding protein 1291 42.41 0 1464754..1466592 + 612 146292402 - Sputcn32_1299 - peptidase M1, membrane alanine aminopeptidase 1292 38.68 -1 1467157..1467642 - 161 146292403 - Sputcn32_1300 - glutathione peroxidase 1293 43.57 0 1467706..1469160 + 484 146292404 - Sputcn32_1301 - magnesium transporter 1294 41.95 0 1469205..1469726 + 173 146292405 - Sputcn32_1302 - GCN5-related N-acetyltransferase 1295 43.33 0 1469891..1470430 + 179 146292406 - Sputcn32_1303 - YfaZ family protein 1296 40.40 -1 1470728..1470925 - 65 146292407 - Sputcn32_1304 - hypothetical protein 1297 49.50 +1 1471175..1472566 - 463 146292408 - Sputcn32_1305 - Fmu (Sun) domain-containing protein 1298 46.64 0 1472805..1473473 - 222 146292409 - Sputcn32_1306 - glutathione S-transferase domain-containing protein 1299 46.08 0 1473491..1474204 - 237 146292410 - Sputcn32_1307 - hypothetical protein 1300 46.21 0 1474519..1476732 + 737 146292411 - Sputcn32_1308 - TonB-dependent heme/hemoglobin receptor family protein 1301 48.23 0 1476867..1477430 + 187 146292412 - Sputcn32_1309 - PhnA protein-like 1302 48.51 +1 1477529..1478734 - 401 146292413 - Sputcn32_1310 - major facilitator transporter 1303 48.36 0 1478965..1479543 + 192 146292414 - Sputcn32_1311 - MarR family transcriptional regulator 1304 45.66 0 1479669..1480682 + 337 146292415 - Sputcn32_1312 - succinylglutamate desuccinylase/aspartoacylase 1305 42.90 0 1480688..1482715 - 675 146292416 - Sputcn32_1313 - methyl-accepting chemotaxis sensory transducer 1306 44.66 0 1482887..1483513 + 208 146292417 - Sputcn32_1314 - fumarylacetoacetate (FAA) hydrolase 1307 44.86 0 1483624..1483866 - 80 146292418 - Sputcn32_1315 - hypothetical protein 1308 41.44 0 1484197..1484985 + 262 146292419 - Sputcn32_1316 - hypothetical protein 1309 41.94 0 1485147..1485692 - 181 146292420 - Sputcn32_1317 - transport-associated 1310 43.78 0 1485920..1486369 - 149 146292421 - Sputcn32_1318 - hypothetical protein 1311 43.16 0 1486605..1487978 + 457 146292422 - Sputcn32_1319 - sigma-54 dependent trancsriptional regulator 1312 46.29 0 1488056..1489738 - 560 146292423 - Sputcn32_1320 - hypothetical protein 44.78 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0