IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
699	 46.28	0	861751..862677	+	308	157960529	-	Spea_0701	-	transcriptional regulator, CadC
700	 38.46	-2	862938..863249	-	103	157960530	-	Spea_0702	-	hypothetical protein
701	 48.47	+1	863577..864098	-	173	157960531	-	Spea_0703	-	2'-5' RNA ligase
702	 50.31	+1	864225..866834	+	869	157960532	-	Spea_0704	-	ATP-dependent helicase HrpB
703	 50.91	+1	866859..869231	+	790	157960533	-	Spea_0705	-	penicillin-binding protein 1B
704	 45.19	0	869221..869709	+	162	157960534	-	Spea_0706	-	hypothetical protein
705	 51.14	+1	869807..870991	-	394	157960535	-	Spea_0707	-	sugar efflux transporter
706	 46.58	0	871391..871843	-	150	157960536	-	Spea_0708	-	GCN5-related N-acetyltransferase
707	 46.89	0	872041..872829	-	262	157960537	-	Spea_0709	-	PepSY-associated TM helix domain-containing protein
708	 41.12	-1	873114..874025	-	303	157960538	-	Spea_0710	-	hypothetical protein
709	 45.40	0	874000..874521	-	173	157960539	-	Spea_0711	-	FMN-binding domain-containing protein
710	 46.06	0	874636..875814	-	392	157960540	-	Spea_0712	-	phosphate-selective porin O and P
711	 47.26	0	876103..878292	-	729	157960541	-	Spea_0713	-	TonB-dependent receptor
712	 45.25	0	878528..879232	+	234	157960542	-	Spea_0714	-	hypothetical protein
713	 48.50	+1	879989..881359	+	456	157960543	-	Spea_0715	-	amino acid carrier protein
714	 50.69	+1	881772..885446	+	1224	157960544	-	Spea_0716	-	hypothetical protein
715	 48.47	+1	885446..886099	+	217	157960545	-	Spea_0717	-	hypothetical protein
716	 49.80	+1	886101..887321	+	406	157960546	-	Spea_0718	-	hypothetical protein
717	 49.32	+1	888179..889435	+	418	157960547	-	Spea_0719	-	sodium:dicarboxylate symporter
718	 49.89	+1	889568..890950	-	460	157960548	-	Spea_0720	-	two component, sigma54 specific, Fis family transcriptional regulator
719	 49.21	+1	890950..892977	-	675	157960549	-	Spea_0721	-	histidine kinase
720	 47.07	0	893397..895187	+	596	157960550	-	Spea_0722	-	flavocytochrome c
721	 37.42	-2	895957..896763	+	268	157960551	-	Spea_0723	-	alpha/beta hydrolase fold
722	 39.46	-1	897237..898313	-	358	157960552	-	Spea_0724	-	hypothetical protein
723	 42.99	0	899535..900539	+	334	157960553	-	Spea_0725	-	basic membrane lipoprotein
724	 45.21	0	900666..902282	+	538	157960554	-	Spea_0726	-	ABC transporter related
725	 47.30	0	902279..903409	+	376	157960555	-	Spea_0727	-	inner-membrane translocator
726	 50.62	+1	903413..904378	+	321	157960556	-	Spea_0728	-	inner-membrane translocator
727	 37.65	-2	904899..905315	+	138	157960557	-	Spea_0729	-	hypothetical protein
728	 38.67	-1	905386..905985	+	199	157960558	-	Spea_0730	-	hypothetical protein
729	 47.68	0	906550..907539	-	329	157960559	-	Spea_0731	-	fructose-1,6-bisphosphatase
730	 48.60	+1	907792..910038	+	748	157960560	-	Spea_0732	-	peptidase S9B dipeptidylpeptidase IV subunit
731	 44.07	0	910471..911187	-	238	157960561	-	Spea_0733	-	two-component response regulator
732	 43.14	0	911749..912105	+	118	157960562	-	Spea_0734	-	hypothetical protein
733	 50.69	+1	912895..914265	+	456	157960563	-	Spea_0735	-	aspartate kinase III
734	 49.14	+1	914301..915407	+	368	157960564	-	Spea_0736	-	succinylglutamate desuccinylase/aspartoacylase
735	 45.24	0	915685..916146	-	153	157960565	-	Spea_0737	-	DNA-binding transcriptional regulator AsnC
736	 48.97	+1	916411..917088	-	225	157960566	-	Spea_0738	-	pseudouridine synthase
737	 47.42	0	917202..917492	-	96	157960567	-	Spea_0739	-	hypothetical protein
738	 47.13	0	917531..918052	-	173	157960568	-	Spea_0740	-	methyltransferase type 12
739	 47.20	0	918057..918467	-	136	157960569	-	Spea_0741	-	hypothetical protein
740	 47.07	0	919122..920111	+	329	157960570	-	Spea_0742	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
741	 48.51	+1	920124..920861	+	245	157960571	-	Spea_0743	-	dienelactone hydrolase
742	 44.57	0	920984..921517	-	177	157960572	-	Spea_0744	-	hypothetical protein
743	 49.19	+1	921814..922557	+	247	157960573	-	Spea_0745	-	spermine synthase
744	 46.49	0	923053..923622	+	189	157960574	-	Spea_0746	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
745	 48.63	+1	923915..925489	+	524	157960575	-	Spea_0747	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
746	 41.67	-1	925608..926735	+	375	157960576	-	Spea_0748	-	diguanylate cyclase
747	 47.98	0	926794..926991	-	65	157960577	-	Spea_0749	-	hypothetical protein
748	 49.16	+1	927428..928855	-	475	157960578	-	Spea_0750	-	hypothetical protein
749	 45.80	0	929175..929591	-	138	157960579	-	Spea_0751	-	hypothetical protein
750	 50.34	+1	930076..931251	+	391	157960580	-	Spea_0752	-	FAD dependent oxidoreductase
751	 49.75	+1	931409..932596	+	395	157960581	-	Spea_0753	-	chromate transporter
752	 51.24	+1	932673..936995	-	1440	157960582	-	Spea_0754	-	formate dehydrogenase, alpha subunit
753	 48.14	0	937293..938285	-	330	157960583	-	Spea_0755	-	Ion transport 2 domain-containing protein
754	 47.39	0	938835..939716	+	293	157960584	-	Spea_0756	-	peptide chain release factor 2
755	 46.88	0	939729..941234	+	501	157960585	-	Spea_0757	-	lysyl-tRNA synthetase
756	 47.02	0	941881..944400	+	839	157960586	-	Spea_0758	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
757	 49.16	+1	944422..945015	-	197	157960587	-	Spea_0759	-	pseudouridine synthase
758	 46.09	0	945297..946088	+	263	157960588	-	Spea_0760	-	glucosamine-6-phosphate isomerase
759	 44.38	0	946690..947232	+	180	157960589	-	Spea_0761	-	hypothetical protein
760	 48.36	0	947312..947983	+	223	157960590	-	Spea_0762	-	nitroreductase
761	 45.60	0	948023..948340	+	105	157960591	-	Spea_0763	-	cupin family protein
762	 47.90	0	948489..950438	+	649	157960592	-	Spea_0764	-	peptidase U32
763	 42.93	0	950515..950889	+	124	157960593	-	Spea_0765	-	hypothetical protein
764	 51.45	+1	951008..951454	-	148	157960594	-	Spea_0766	-	Fe-S metabolism associated SufE
765	 50.25	+1	951760..952971	-	403	157960595	-	Spea_0767	-	SufS subfamily cysteine desulfurase
766	 48.47	+1	953172..954215	-	347	157960596	-	Spea_0768	-	aldo/keto reductase
767	 46.92	0	954341..955282	-	313	157960597	-	Spea_0769	-	MarR family transcriptional regulator
768	 48.52	+1	955376..955915	-	179	157960598	-	Spea_0770	-	NTPase
769	 43.36	0	956473..957759	+	428	157960599	-	Spea_0771	-	aromatic amino acid permease
770	 46.35	0	957934..959301	+	455	157960600	-	Spea_0772	-	L-serine dehydratase 1
771	 47.07	0	959385..959828	-	147	157960601	-	Spea_0773	-	GCN5-related N-acetyltransferase
772	 47.08	0	959968..960258	+	96	157960602	-	Spea_0774	-	hypothetical protein
773	 46.11	0	960429..961727	+	432	157960603	-	Spea_0775	-	sodium:dicarboxylate symporter
774	 43.00	0	962027..962440	-	137	157960604	-	Spea_0776	-	protein of unknown function DUF306 Meta and HslJ
775	 42.38	0	962519..962728	+	69	157960605	-	Spea_0777	-	hypothetical protein
776	 47.57	0	962918..963865	-	315	157960606	-	Spea_0778	-	diguanylate cyclase
777	 46.77	0	964148..964705	+	185	157960607	-	Spea_0779	-	GCN5-related N-acetyltransferase
778	 42.74	0	964714..965064	+	116	157960608	-	Spea_0780	-	hypothetical protein
779	 41.71	-1	965349..965885	-	178	157960609	-	Spea_0781	-	hypothetical protein
780	 44.64	0	966376..967074	+	232	157960610	-	Spea_0782	-	hypothetical protein
781	 37.25	-2	967539..968558	-	339	157960611	-	Spea_0783	-	hypothetical protein
782	 41.18	-1	969568..970395	+	275	157960612	-	Spea_0784	-	hypothetical protein
783	 40.58	-1	970701..971528	+	275	157960613	-	Spea_0785	-	hypothetical protein
784	 44.73	0	971651..972124	-	157	157960614	-	Spea_0786	-	GCN5-related N-acetyltransferase
785	 47.71	0	972502..973656	-	384	157960615	-	Spea_0787	-	S-adenosylmethionine synthetase
786	 49.05	+1	974163..976154	+	663	157960616	-	Spea_0788	-	transketolase
787	 47.35	0	976253..977272	+	339	157960617	-	Spea_0789	-	erythrose 4-phosphate dehydrogenase
788	 50.17	+1	977642..978817	+	391	157960618	-	Spea_0790	-	phosphoglycerate kinase
789	 48.45	0	979126..980190	+	354	157960619	-	Spea_0791	-	fructose-1,6-bisphosphate aldolase
790	 44.53	0	980408..981148	+	246	157960620	-	Spea_0792	-	hypothetical protein
791	 38.15	-2	981469..982215	+	248	157960621	-	Spea_0793	-	putative transcriptional regulator, CadC
792	 42.47	0	982334..982738	+	134	157960622	-	Spea_0794	-	hypothetical protein
793	 45.40	0	982985..984418	+	477	157960623	-	Spea_0795	-	hypothetical protein
794	 46.31	0	984632..986851	-	739	157960624	-	Spea_0796	-	putative diguanylate cyclase
795	 46.80	0	986977..987585	-	202	157960625	-	Spea_0797	-	radical SAM domain-containing protein
796	 41.41	-1	987772..988155	+	127	157960626	-	Spea_0798	-	transposase
797	 43.62	0	988272..989000	+	242	157960627	-	Spea_0799	-	integrase catalytic region
798	 48.74	+1	989039..992185	-	1048	157960628	-	Spea_0800	-	acriflavin resistance protein
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.