IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
658	 47.76	0	818174..819670	-	498	157960488	-	Spea_0660	-	hypothetical protein
659	 45.24	0	819752..820717	-	321	157960489	-	Spea_0661	-	phospholipase A(1)
660	 49.75	+1	821127..821942	+	271	157960490	-	Spea_0662	-	uroporphyrin-III C-methyltransferase
661	 47.74	0	821969..822877	+	302	157960491	-	Spea_0663	-	sulfate adenylyltransferase subunit 2
662	 48.82	+1	822927..824366	+	479	157960492	-	Spea_0664	-	sulfate adenylyltransferase subunit 1
663	 49.68	+1	824369..826093	+	574	157960493	-	Spea_0665	-	TrkA domain-containing protein
664	 51.62	+1	826183..826800	+	205	157960494	-	Spea_0666	-	adenylyl-sulfate kinase
665	 38.29	-2	826858..827301	+	147	157960495	-	Spea_0667	-	GCN5-related N-acetyltransferase
666	 50.52	+1	827407..828267	-	286	157960496	-	Spea_0668	-	hypothetical protein
667	 48.61	+1	828340..829530	-	396	157960497	-	Spea_0669	-	major facilitator transporter
668	 48.58	+1	829855..831264	+	469	157960498	-	Spea_0670	-	hypothetical protein
669	 48.96	+1	831293..832444	+	383	157960499	-	Spea_0671	-	putative lipoprotein
670	 50.97	+1	832557..834212	+	551	157960500	-	Spea_0672	-	hypothetical protein
671	 42.88	0	834432..834965	+	177	157960501	-	Spea_0673	-	protoporphyrinogen oxidase
672	 46.52	0	834980..835510	+	176	157960502	-	Spea_0674	-	hypothetical protein
673	 48.95	+1	835795..836511	-	238	157960503	-	Spea_0675	-	pseudouridine synthase
674	 41.18	-1	836524..837237	-	237	157960504	-	Spea_0676	-	hypothetical protein
675	 45.03	0	837389..838807	-	472	157960505	-	Spea_0677	-	Na+/H+ antiporter NhaC
676	 42.86	0	839151..839675	+	174	157960506	-	Spea_0678	-	hypothetical protein
677	 44.53	0	839735..841789	+	684	157960507	-	Spea_0679	-	TPR repeat-containing diguanylate cyclase and serine/threonine protein kinase
678	 45.93	0	842022..843188	+	388	157960508	-	Spea_0680	-	porin
679	 43.62	0	843229..843957	-	242	157960509	-	Spea_0681	-	integrase catalytic region
680	 41.41	-1	844074..844457	-	127	157960510	-	Spea_0682	-	transposase
681	 44.87	0	844599..845309	-	236	157960511	-	Spea_0683	-	hypothetical protein
682	 46.98	0	845453..846097	-	214	157960512	-	Spea_0684	-	cob(II)yrinic acid a,c-diamide reductase
683	 47.00	0	846196..847512	-	438	157960513	-	Spea_0685	-	anaerobic C4-dicarboxylate transporter
684	 48.41	0	847864..849249	+	461	157960514	-	Spea_0686	-	UDP-N-acetylmuramate
685	 48.78	+1	849256..849909	+	217	157960515	-	Spea_0687	-	aromatic acid decarboxylase
686	 42.88	0	849917..850450	+	177	157960516	-	Spea_0688	-	hypoxanthine phosphoribosyltransferase
687	 44.76	0	850577..851521	+	314	157960517	-	Spea_0689	-	ABC transporter related
688	 45.69	0	851518..852294	+	258	157960518	-	Spea_0690	-	ABC-2 type transporter
689	 42.86	0	852366..852701	-	111	157960519	-	Spea_0691	-	hypothetical protein
690	 41.62	-1	852786..853292	-	168	157960520	-	Spea_0692	-	hypothetical protein
691	 47.07	0	853642..854493	-	283	157960521	-	Spea_0693	-	pantoate--beta-alanine ligase
692	 50.69	+1	854565..855359	-	264	157960522	-	Spea_0694	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
693	 50.91	+1	855493..855987	-	164	157960523	-	Spea_0695	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
694	 48.12	0	855987..857291	-	434	157960524	-	Spea_0696	-	poly(A) polymerase
695	 47.21	0	857471..858349	-	292	157960525	-	Spea_0697	-	glutamyl-tRNA synthetase class Ic
696	 45.05	0	858408..858851	-	147	157960526	-	Spea_0698	-	TraR/DksA family transcriptional regulator
697	 46.67	0	859010..859714	-	234	157960527	-	Spea_0699	-	sugar fermentation stimulation protein
698	 51.80	+2	860251..861528	+	425	157960528	-	Spea_0700	-	aminopeptidase B
699	 46.28	0	861751..862677	+	308	157960529	-	Spea_0701	-	transcriptional regulator, CadC
700	 38.46	-2	862938..863249	-	103	157960530	-	Spea_0702	-	hypothetical protein
701	 48.47	+1	863577..864098	-	173	157960531	-	Spea_0703	-	2'-5' RNA ligase
702	 50.31	+1	864225..866834	+	869	157960532	-	Spea_0704	-	ATP-dependent helicase HrpB
703	 50.91	+1	866859..869231	+	790	157960533	-	Spea_0705	-	penicillin-binding protein 1B
704	 45.19	0	869221..869709	+	162	157960534	-	Spea_0706	-	hypothetical protein
705	 51.14	+1	869807..870991	-	394	157960535	-	Spea_0707	-	sugar efflux transporter
706	 46.58	0	871391..871843	-	150	157960536	-	Spea_0708	-	GCN5-related N-acetyltransferase
707	 46.89	0	872041..872829	-	262	157960537	-	Spea_0709	-	PepSY-associated TM helix domain-containing protein
708	 41.12	-1	873114..874025	-	303	157960538	-	Spea_0710	-	hypothetical protein
709	 45.40	0	874000..874521	-	173	157960539	-	Spea_0711	-	FMN-binding domain-containing protein
710	 46.06	0	874636..875814	-	392	157960540	-	Spea_0712	-	phosphate-selective porin O and P
711	 47.26	0	876103..878292	-	729	157960541	-	Spea_0713	-	TonB-dependent receptor
712	 45.25	0	878528..879232	+	234	157960542	-	Spea_0714	-	hypothetical protein
713	 48.50	+1	879989..881359	+	456	157960543	-	Spea_0715	-	amino acid carrier protein
714	 50.69	+1	881772..885446	+	1224	157960544	-	Spea_0716	-	hypothetical protein
715	 48.47	+1	885446..886099	+	217	157960545	-	Spea_0717	-	hypothetical protein
716	 49.80	+1	886101..887321	+	406	157960546	-	Spea_0718	-	hypothetical protein
717	 49.32	+1	888179..889435	+	418	157960547	-	Spea_0719	-	sodium:dicarboxylate symporter
718	 49.89	+1	889568..890950	-	460	157960548	-	Spea_0720	-	two component, sigma54 specific, Fis family transcriptional regulator
719	 49.21	+1	890950..892977	-	675	157960549	-	Spea_0721	-	histidine kinase
720	 47.07	0	893397..895187	+	596	157960550	-	Spea_0722	-	flavocytochrome c
721	 37.42	-2	895957..896763	+	268	157960551	-	Spea_0723	-	alpha/beta hydrolase fold
722	 39.46	-1	897237..898313	-	358	157960552	-	Spea_0724	-	hypothetical protein
723	 42.99	0	899535..900539	+	334	157960553	-	Spea_0725	-	basic membrane lipoprotein
724	 45.21	0	900666..902282	+	538	157960554	-	Spea_0726	-	ABC transporter related
725	 47.30	0	902279..903409	+	376	157960555	-	Spea_0727	-	inner-membrane translocator
726	 50.62	+1	903413..904378	+	321	157960556	-	Spea_0728	-	inner-membrane translocator
727	 37.65	-2	904899..905315	+	138	157960557	-	Spea_0729	-	hypothetical protein
728	 38.67	-1	905386..905985	+	199	157960558	-	Spea_0730	-	hypothetical protein
729	 47.68	0	906550..907539	-	329	157960559	-	Spea_0731	-	fructose-1,6-bisphosphatase
730	 48.60	+1	907792..910038	+	748	157960560	-	Spea_0732	-	peptidase S9B dipeptidylpeptidase IV subunit
731	 44.07	0	910471..911187	-	238	157960561	-	Spea_0733	-	two-component response regulator
732	 43.14	0	911749..912105	+	118	157960562	-	Spea_0734	-	hypothetical protein
733	 50.69	+1	912895..914265	+	456	157960563	-	Spea_0735	-	aspartate kinase III
734	 49.14	+1	914301..915407	+	368	157960564	-	Spea_0736	-	succinylglutamate desuccinylase/aspartoacylase
735	 45.24	0	915685..916146	-	153	157960565	-	Spea_0737	-	DNA-binding transcriptional regulator AsnC
736	 48.97	+1	916411..917088	-	225	157960566	-	Spea_0738	-	pseudouridine synthase
737	 47.42	0	917202..917492	-	96	157960567	-	Spea_0739	-	hypothetical protein
738	 47.13	0	917531..918052	-	173	157960568	-	Spea_0740	-	methyltransferase type 12
739	 47.20	0	918057..918467	-	136	157960569	-	Spea_0741	-	hypothetical protein
740	 47.07	0	919122..920111	+	329	157960570	-	Spea_0742	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
741	 48.51	+1	920124..920861	+	245	157960571	-	Spea_0743	-	dienelactone hydrolase
742	 44.57	0	920984..921517	-	177	157960572	-	Spea_0744	-	hypothetical protein
743	 49.19	+1	921814..922557	+	247	157960573	-	Spea_0745	-	spermine synthase
744	 46.49	0	923053..923622	+	189	157960574	-	Spea_0746	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
745	 48.63	+1	923915..925489	+	524	157960575	-	Spea_0747	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
746	 41.67	-1	925608..926735	+	375	157960576	-	Spea_0748	-	diguanylate cyclase
747	 47.98	0	926794..926991	-	65	157960577	-	Spea_0749	-	hypothetical protein
748	 49.16	+1	927428..928855	-	475	157960578	-	Spea_0750	-	hypothetical protein
749	 45.80	0	929175..929591	-	138	157960579	-	Spea_0751	-	hypothetical protein
750	 50.34	+1	930076..931251	+	391	157960580	-	Spea_0752	-	FAD dependent oxidoreductase
751	 49.75	+1	931409..932596	+	395	157960581	-	Spea_0753	-	chromate transporter
752	 51.24	+1	932673..936995	-	1440	157960582	-	Spea_0754	-	formate dehydrogenase, alpha subunit
753	 48.14	0	937293..938285	-	330	157960583	-	Spea_0755	-	Ion transport 2 domain-containing protein
754	 47.39	0	938835..939716	+	293	157960584	-	Spea_0756	-	peptide chain release factor 2
755	 46.88	0	939729..941234	+	501	157960585	-	Spea_0757	-	lysyl-tRNA synthetase
756	 47.02	0	941881..944400	+	839	157960586	-	Spea_0758	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
757	 49.16	+1	944422..945015	-	197	157960587	-	Spea_0759	-	pseudouridine synthase
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.