IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
589	 44.13	0	724469..725533	-	354	157960419	-	Spea_0590	-	porin
590	 46.57	0	725925..726725	+	266	157960420	-	Spea_0591	-	UBA/THIF-type NAD/FAD binding protein
591	 43.69	0	726936..727553	+	205	157960421	-	Spea_0592	-	hypothetical protein
592	 40.74	-1	727650..727784	-	44	157960422	-	Spea_0593	-	hypothetical protein
593	 43.86	0	728937..730808	+	623	157960423	-	Spea_0594	-	peptidase S9 prolyl oligopeptidase
594	 46.76	0	730899..732023	-	374	157960424	-	Spea_0595	-	peptidase M50
595	 48.83	+1	732137..733801	-	554	157960425	-	Spea_0596	-	hypothetical protein
596	 44.74	0	734320..735345	-	341	157960426	-	Spea_0597	-	rRNA (guanine-N(2)-)-methyltransferase
597	 48.65	+1	735612..736949	-	445	157960427	-	Spea_0598	-	alkaline phosphatase
598	 47.90	0	736964..737917	-	317	157960428	-	Spea_0599	-	glutathione synthetase
599	 48.36	0	738034..738765	-	243	157960429	-	Spea_0600	-	hypothetical protein
600	 41.30	-1	739231..739983	+	250	157960430	-	Spea_0601	-	deoxyribonuclease I
601	 50.44	+1	740018..740584	-	188	157960431	-	Spea_0602	-	protein of unknown function DUF335 SprT
602	 48.32	0	740862..742022	-	386	157960432	-	Spea_0603	-	hypothetical protein
603	 46.93	0	742513..743424	-	303	157960433	-	Spea_0604	-	LysR family transcriptional regulator
604	 46.55	0	743547..748100	+	1517	157960434	-	Spea_0605	-	carbamoyl-phosphate synthase L chain ATP-binding
605	 47.63	0	748187..749431	-	414	157960435	-	Spea_0606	-	sodium/hydrogen exchanger
606	 43.54	0	749576..750388	-	270	157960436	-	Spea_0607	-	hypothetical protein
607	 43.19	0	750412..751557	-	381	157960437	-	Spea_0608	-	UDP-galactopyranose mutase
608	 40.00	-1	752424..753128	+	234	157960438	-	Spea_0609	-	sporulation domain-containing protein
609	 42.86	0	753282..753911	+	209	157960439	-	Spea_0610	-	hypothetical protein
610	 38.89	-1	753974..754423	+	149	157960440	-	Spea_0611	-	hypothetical protein
611	 42.86	0	754521..755360	+	279	157960441	-	Spea_0612	-	hypothetical protein
612	 42.21	0	755440..758571	+	1043	157960442	-	Spea_0613	-	hypothetical protein
613	 45.58	0	758640..759488	+	282	157960443	-	Spea_0614	-	sporulation domain-containing protein
614	 42.42	0	759612..759941	-	109	157960444	-	Spea_0615	-	hypothetical protein
615	 45.70	0	760002..761036	-	344	157960445	-	Spea_0616	-	AraC family transcriptional regulator
616	 46.40	0	761205..762566	+	453	157960446	-	Spea_0617	-	hypothetical protein
617	 45.88	0	762721..763605	+	294	157960447	-	Spea_0618	-	hypothetical protein
618	 45.42	0	763617..763856	-	79	157960448	-	Spea_0619	-	hypothetical protein
619	 49.30	+1	763871..764296	-	141	157960449	-	Spea_0620	-	nitrate reductase cytochrome c-type subunit (NapB)
620	 49.50	+1	764293..765189	-	298	157960450	-	Spea_0621	-	quinol dehydrogenase membrane component
621	 48.84	+1	765186..765920	-	244	157960451	-	Spea_0622	-	quinol dehydrogenase periplasmic component
622	 48.49	+1	765981..768461	-	826	157960452	-	Spea_0623	-	nitrate reductase
623	 43.12	0	768451..768726	-	91	157960453	-	Spea_0624	-	NapD family protein
624	 49.50	+1	769086..770192	-	368	157960454	-	Spea_0625	-	hypothetical protein
625	 50.67	+1	770189..772726	-	845	157960455	-	Spea_0626	-	hypothetical protein
626	 49.03	+1	772719..773387	-	222	157960456	-	Spea_0627	-	ABC transporter related
627	 48.79	+1	773739..779036	+	1765	157960457	-	Spea_0628	-	multi-sensor hybrid histidine kinase
628	 48.92	+1	779176..780195	+	339	157960458	-	Spea_0629	-	response regulator receiver modulated metal dependent phosphohydrolase
629	 47.94	0	780304..781275	-	323	157960459	-	Spea_0630	-	glycine cleavage T protein (aminomethyl transferase)
630	 49.02	+1	781736..782965	-	409	157960460	-	Spea_0631	-	D-3-phosphoglycerate dehydrogenase
631	 46.83	0	783222..783836	+	204	157960461	-	Spea_0632	-	hypothetical protein
632	 43.56	0	784084..784758	+	224	157960462	-	Spea_0633	-	LuxR family transcriptional regulator
633	 47.84	0	785435..786661	+	408	157960463	-	Spea_0634	-	Na+ dependent nucleoside transporter
634	 47.12	0	786755..787465	+	236	157960464	-	Spea_0635	-	purine nucleoside phosphorylase
635	 49.54	+1	787836..788273	+	145	157960465	-	Spea_0636	-	thioesterase superfamily protein
636	 43.14	0	788554..788808	+	84	157960466	-	Spea_0637	-	hypothetical protein
637	 48.29	0	789273..790736	+	487	157960467	-	Spea_0638	-	catalase
638	 49.19	+1	791003..791557	-	184	157960468	-	Spea_0640	-	hypothetical protein
639	 48.92	+1	792238..793437	+	399	157960469	-	Spea_0641	-	aromatic amino acid permease
640	 47.47	0	793716..795872	+	718	157960470	-	Spea_0642	-	hypothetical protein
641	 33.33	-2	796579..797094	+	171	157960471	-	Spea_0643	-	hypothetical protein
642	 39.18	-1	797245..797997	+	250	157960472	-	Spea_0644	-	hypothetical protein
643	 48.33	0	798736..799662	-	308	157960473	-	Spea_0645	-	lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase
644	 51.48	+1	799745..801193	+	482	157960474	-	Spea_0646	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
645	 49.95	+1	801234..802154	+	306	157960475	-	Spea_0647	-	hypothetical protein
646	 48.10	0	802320..802793	+	157	157960476	-	Spea_0648	-	TetR family transcriptional regulator
647	 48.11	0	803015..804415	-	466	157960477	-	Spea_0649	-	MltA-interacting MipA family protein
648	 49.10	+1	804859..806241	-	460	157960478	-	Spea_0650	-	NAD(P)(+) transhydrogenase (AB-specific)
649	 48.91	+1	806248..806523	-	91	157960479	-	Spea_0651	-	oxidoreductase
650	 49.27	+1	806523..807752	-	409	157960480	-	Spea_0652	-	NAD(P) transhydrogenase subunit alpha
651	 51.14	+1	808052..809848	+	598	157960481	-	Spea_0653	-	sulfite reductase (NADPH) flavoprotein, alpha chain
652	 49.76	+1	809939..811636	+	565	157960482	-	Spea_0654	-	sulfite reductase subunit beta
653	 48.02	0	811629..812384	+	251	157960483	-	Spea_0655	-	phosphoadenosine phosphosulfate reductase
654	 45.62	0	813065..814789	+	574	157960484	-	Spea_0656	-	hypothetical protein
655	 44.37	0	814903..815328	+	141	157960485	-	Spea_0657	-	hypothetical protein
656	 44.57	0	815563..816114	+	183	157960486	-	Spea_0658	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
657	 47.27	0	817195..818055	-	286	157960487	-	Spea_0659	-	protein of unknown function RIO1
658	 47.76	0	818174..819670	-	498	157960488	-	Spea_0660	-	hypothetical protein
659	 45.24	0	819752..820717	-	321	157960489	-	Spea_0661	-	phospholipase A(1)
660	 49.75	+1	821127..821942	+	271	157960490	-	Spea_0662	-	uroporphyrin-III C-methyltransferase
661	 47.74	0	821969..822877	+	302	157960491	-	Spea_0663	-	sulfate adenylyltransferase subunit 2
662	 48.82	+1	822927..824366	+	479	157960492	-	Spea_0664	-	sulfate adenylyltransferase subunit 1
663	 49.68	+1	824369..826093	+	574	157960493	-	Spea_0665	-	TrkA domain-containing protein
664	 51.62	+1	826183..826800	+	205	157960494	-	Spea_0666	-	adenylyl-sulfate kinase
665	 38.29	-2	826858..827301	+	147	157960495	-	Spea_0667	-	GCN5-related N-acetyltransferase
666	 50.52	+1	827407..828267	-	286	157960496	-	Spea_0668	-	hypothetical protein
667	 48.61	+1	828340..829530	-	396	157960497	-	Spea_0669	-	major facilitator transporter
668	 48.58	+1	829855..831264	+	469	157960498	-	Spea_0670	-	hypothetical protein
669	 48.96	+1	831293..832444	+	383	157960499	-	Spea_0671	-	putative lipoprotein
670	 50.97	+1	832557..834212	+	551	157960500	-	Spea_0672	-	hypothetical protein
671	 42.88	0	834432..834965	+	177	157960501	-	Spea_0673	-	protoporphyrinogen oxidase
672	 46.52	0	834980..835510	+	176	157960502	-	Spea_0674	-	hypothetical protein
673	 48.95	+1	835795..836511	-	238	157960503	-	Spea_0675	-	pseudouridine synthase
674	 41.18	-1	836524..837237	-	237	157960504	-	Spea_0676	-	hypothetical protein
675	 45.03	0	837389..838807	-	472	157960505	-	Spea_0677	-	Na+/H+ antiporter NhaC
676	 42.86	0	839151..839675	+	174	157960506	-	Spea_0678	-	hypothetical protein
677	 44.53	0	839735..841789	+	684	157960507	-	Spea_0679	-	TPR repeat-containing diguanylate cyclase and serine/threonine protein kinase
678	 45.93	0	842022..843188	+	388	157960508	-	Spea_0680	-	porin
679	 43.62	0	843229..843957	-	242	157960509	-	Spea_0681	-	integrase catalytic region
680	 41.41	-1	844074..844457	-	127	157960510	-	Spea_0682	-	transposase
681	 44.87	0	844599..845309	-	236	157960511	-	Spea_0683	-	hypothetical protein
682	 46.98	0	845453..846097	-	214	157960512	-	Spea_0684	-	cob(II)yrinic acid a,c-diamide reductase
683	 47.00	0	846196..847512	-	438	157960513	-	Spea_0685	-	anaerobic C4-dicarboxylate transporter
684	 48.41	0	847864..849249	+	461	157960514	-	Spea_0686	-	UDP-N-acetylmuramate
685	 48.78	+1	849256..849909	+	217	157960515	-	Spea_0687	-	aromatic acid decarboxylase
686	 42.88	0	849917..850450	+	177	157960516	-	Spea_0688	-	hypoxanthine phosphoribosyltransferase
687	 44.76	0	850577..851521	+	314	157960517	-	Spea_0689	-	ABC transporter related
688	 45.69	0	851518..852294	+	258	157960518	-	Spea_0690	-	ABC-2 type transporter
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.