IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
572	 41.41	-1	703412..703795	-	127	157960402	-	Spea_0573	-	transposase
573	 43.44	0	703914..704645	-	243	157960403	-	Spea_0574	-	putative cation efflux protein
574	 44.44	0	705180..705593	+	137	157960404	-	Spea_0575	-	hypothetical protein
575	 46.80	0	705652..706683	-	343	157960405	-	Spea_0576	-	aldose 1-epimerase
576	 50.82	+1	706720..707874	-	384	157960406	-	Spea_0577	-	galactokinase
577	 47.33	0	708196..709617	-	473	157960407	-	Spea_0578	-	SSS family solute/sodium (Na+) symporter
578	 52.08	+2	709762..709905	-	47	157960408	-	Spea_0579	-	beta-galactosidase
579	 49.60	+1	709947..713180	-	1077	157960409	-	Spea_0580	-	glycoside hydrolase family protein
580	 48.49	+1	713207..714136	-	309	157960410	-	Spea_0581	-	WD40 domain-containing protein
581	 47.44	0	714205..715863	-	552	157960411	-	Spea_0582	-	sodium/hydrogen exchanger
582	 46.43	0	716101..717933	-	610	157960412	-	Spea_0583	-	thiol:disulfide interchange protein precursor
583	 45.06	0	717930..718253	-	107	<