IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
545	 41.34	-1	671678..672139	-	153	157960375	-	Spea_0546	-	hypothetical protein
546	 47.08	0	672400..673461	+	353	157960376	-	Spea_0547	-	hypothetical protein
547	 46.80	0	673614..674207	+	197	157960377	-	Spea_0548	-	ATP-dependent protease La
548	 47.18	0	674518..675456	+	312	157960378	-	Spea_0549	-	pseudouridine synthase
549	 48.44	0	675719..677605	-	628	157960379	-	Spea_0550	-	hypothetical protein
550	 50.32	+1	677716..678639	+	307	157960380	-	Spea_0551	-	dTDP-4-dehydrorhamnose reductase
551	 50.42	+1	678668..679990	+	440	157960381	-	Spea_0552	-	histidine kinase
552	 46.30	0	679983..680522	+	179	157960382	-	Spea_0553	-	two component Fis family transcriptional regulator
553	 47.78	0	680705..681853	-	382	157960383	-	Spea_0554	-	sulphate transporter
554	 47.50	0	682132..682851	-	239	157960384	-	Spea_0555	-	short-chain dehydrogenase/reductase SDR
555	 45.14	0	682998..683912	+	304	157960385	-	Spea_0556	-	LysR family transcriptional regulator
556	 46.90	0	684117.