IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
535	 49.73	+1	659098..659469	+	123	157960365	-	Spea_0536	-	hypothetical protein
536	 46.33	0	659541..659717	+	58	157960366	-	Spea_0537	-	hypothetical protein
537	 47.26	0	659872..660309	+	145	157960367	-	Spea_0538	-	hypothetical protein
538	 49.52	+1	660602..661948	+	448	157960368	-	Spea_0539	-	outer membrane efflux family protein, putative
539	 50.51	+1	661959..663338	+	459	157960369	-	Spea_0540	-	RND family efflux transporter MFP subunit
540	 51.75	+2	663351..666575	+	1074	157960370	-	Spea_0541	-	CzcA family heavy metal efflux protein
541	 43.79	0	666874..667179	-	101	157960371	-	Spea_0542	-	hypothetical protein
542	 49.60	+1	667460..668344	+	294	157960372	-	Spea_0543	-	penicillin-insensitive murein endopeptidase
543	 48.78	+1	668459..670744	-	761	157960373	-	Spea_0544	-	aminotransferase class V
544	 42.27	0	671034..671570	-	178	157960374	-	Spea_0545	-	hypothetical protein
545	 41.34	-1	671678..672139	-	153	157960375	-	Spea_0546	-	hypothetical protein
546	 47.08	0	672400..673461	+	353	157960376	-	Spea_0547	-	hypothetical protein
547	 46.80	0	673614..674207	+	197	157960377	-	Spea_0548	-	ATP-dependent protease La
548	 47.18	0	674518..675456	+	312	157960378	-	Spea_0549	-	pseudouridine synthase
549	 48.44	0	675719..677605	-	628	157960379	-	Spea_0550	-	hypothetical protein
550	 50.32	+1	677716..678639	+	307	157960380	-	Spea_0551	-	dTDP-4-dehydrorhamnose reductase
551	 50.42	+1	678668..679990	+	440	157960381	-	Spea_0552	-	histidine kinase
552	 46.30	0	679983..680522	+	179	157960382	-	Spea_0553	-	two component Fis family transcriptional regulator
553	 47.78	0	680705..681853	-	382	157960383	-	Spea_0554	-	sulphate transporter
554	 47.50	0	682132..682851	-	239	157960384	-	Spea_0555	-	short-chain dehydrogenase/reductase SDR
555	 45.14	0	682998..683912	+	304	157960385	-	Spea_0556	-	LysR family transcriptional regulator
556	 46.90	0	684117..685310	+	397	157960386	-	Spea_0557	-	putative plasmid transfer protein
557	 47.27	0	685317..686048	-	243	157960387	-	Spea_0558	-	hypothetical protein
558	 44.13	0	686241..686555	-	104	157960388	-	Spea_0559	-	transcriptional repressor protein MetJ
559	 49.27	+1	686767..687927	+	386	157960389	-	Spea_0560	-	O-succinylhomoserine (thiol)-lyase
560	 48.87	+1	687943..690336	+	797	157960390	-	Spea_0561	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
561	 48.04	0	690542..691432	+	296	157960391	-	Spea_0562	-	5,10-methylenetetrahydrofolate reductase
562	 40.42	-1	691591..691971	+	126	157960392	-	Spea_0563	-	hypothetical protein
563	 45.61	0	692027..692311	+	94	157960393	-	Spea_0564	-	hypothetical protein
564	 42.64	0	692368..693345	+	325	157960394	-	Spea_0565	-	hypothetical protein
565	 46.42	0	693864..695735	-	623	157960395	-	Spea_0566	-	DEAD/DEAH box helicase domain-containing protein
566	 47.47	0	695953..696921	-	322	157960396	-	Spea_0567	-	peptidase M28
567	 44.64	0	696984..697319	-	111	157960397	-	Spea_0568	-	hypothetical protein
568	 48.03	0	697337..700180	-	947	157960398	-	Spea_0569	-	excinuclease ABC, A subunit
569	 48.10	0	700446..701813	+	455	157960399	-	Spea_0570	-	major facilitator transporter
570	 50.37	+1	701847..702515	+	222	157960400	-	Spea_0571	-	single-strand binding protein
571	 43.62	0	702567..703295	-	242	157960401	-	Spea_0572	-	integrase catalytic region
572	 41.41	-1	703412..703795	-	127	157960402	-	Spea_0573	-	transposase
573	 43.44	0	703914..704645	-	243	157960403	-	Spea_0574	-	putative cation efflux protein
574	 44.44	0	705180..705593	+	137	157960404	-	Spea_0575	-	hypothetical protein
575	 46.80	0	705652..706683	-	343	157960405	-	Spea_0576	-	aldose 1-epimerase
576	 50.82	+1	706720..707874	-	384	157960406	-	Spea_0577	-	galactokinase
577	 47.33	0	708196..709617	-	473	157960407	-	Spea_0578	-	SSS family solute/sodium (Na+) symporter
578	 52.08	+2	709762..709905	-	47	157960408	-	Spea_0579	-	beta-galactosidase
579	 49.60	+1	709947..713180	-	1077	157960409	-	Spea_0580	-	glycoside hydrolase family protein
580	 48.49	+1	713207..714136	-	309	157960410	-	Spea_0581	-	WD40 domain-containing protein
581	 47.44	0	714205..715863	-	552	157960411	-	Spea_0582	-	sodium/hydrogen exchanger
582	 46.43	0	716101..717933	-	610	157960412	-	Spea_0583	-	thiol:disulfide interchange protein precursor
583	 45.06	0	717930..718253	-	107	157960413	-	Spea_0584	-	CutA1 divalent ion tolerance protein
584	 48.13	0	718573..719160	+	195	157960414	-	Spea_0585	-	FxsA cytoplasmic membrane protein
585	 47.70	0	719157..720986	-	609	157960415	-	Spea_0586	-	serine/threonine protein kinase
586	 42.98	0	721203..721544	+	113	157960416	-	Spea_0587	-	hypothetical protein
587	 47.58	0	721765..722424	+	219	157960417	-	Spea_0588	-	thiopurine S-methyltransferase
588	 43.19	0	722699..723733	-	344	157960418	-	Spea_0589	-	porin
589	 44.13	0	724469..725533	-	354	157960419	-	Spea_0590	-	porin
590	 46.57	0	725925..726725	+	266	157960420	-	Spea_0591	-	UBA/THIF-type NAD/FAD binding protein
591	 43.69	0	726936..727553	+	205	157960421	-	Spea_0592	-	hypothetical protein
592	 40.74	-1	727650..727784	-	44	157960422	-	Spea_0593	-	hypothetical protein
593	 43.86	0	728937..730808	+	623	157960423	-	Spea_0594	-	peptidase S9 prolyl oligopeptidase
594	 46.76	0	730899..732023	-	374	157960424	-	Spea_0595	-	peptidase M50
595	 48.83	+1	732137..733801	-	554	157960425	-	Spea_0596	-	hypothetical protein
596	 44.74	0	734320..735345	-	341	157960426	-	Spea_0597	-	rRNA (guanine-N(2)-)-methyltransferase
597	 48.65	+1	735612..736949	-	445	157960427	-	Spea_0598	-	alkaline phosphatase
598	 47.90	0	736964..737917	-	317	157960428	-	Spea_0599	-	glutathione synthetase
599	 48.36	0	738034..738765	-	243	157960429	-	Spea_0600	-	hypothetical protein
600	 41.30	-1	739231..739983	+	250	157960430	-	Spea_0601	-	deoxyribonuclease I
601	 50.44	+1	740018..740584	-	188	157960431	-	Spea_0602	-	protein of unknown function DUF335 SprT
602	 48.32	0	740862..742022	-	386	157960432	-	Spea_0603	-	hypothetical protein
603	 46.93	0	742513..743424	-	303	157960433	-	Spea_0604	-	LysR family transcriptional regulator
604	 46.55	0	743547..748100	+	1517	157960434	-	Spea_0605	-	carbamoyl-phosphate synthase L chain ATP-binding
605	 47.63	0	748187..749431	-	414	157960435	-	Spea_0606	-	sodium/hydrogen exchanger
606	 43.54	0	749576..750388	-	270	157960436	-	Spea_0607	-	hypothetical protein
607	 43.19	0	750412..751557	-	381	157960437	-	Spea_0608	-	UDP-galactopyranose mutase
608	 40.00	-1	752424..753128	+	234	157960438	-	Spea_0609	-	sporulation domain-containing protein
609	 42.86	0	753282..753911	+	209	157960439	-	Spea_0610	-	hypothetical protein
610	 38.89	-1	753974..754423	+	149	157960440	-	Spea_0611	-	hypothetical protein
611	 42.86	0	754521..755360	+	279	157960441	-	Spea_0612	-	hypothetical protein
612	 42.21	0	755440..758571	+	1043	157960442	-	Spea_0613	-	hypothetical protein
613	 45.58	0	758640..759488	+	282	157960443	-	Spea_0614	-	sporulation domain-containing protein
614	 42.42	0	759612..759941	-	109	157960444	-	Spea_0615	-	hypothetical protein
615	 45.70	0	760002..761036	-	344	157960445	-	Spea_0616	-	AraC family transcriptional regulator
616	 46.40	0	761205..762566	+	453	157960446	-	Spea_0617	-	hypothetical protein
617	 45.88	0	762721..763605	+	294	157960447	-	Spea_0618	-	hypothetical protein
618	 45.42	0	763617..763856	-	79	157960448	-	Spea_0619	-	hypothetical protein
619	 49.30	+1	763871..764296	-	141	157960449	-	Spea_0620	-	nitrate reductase cytochrome c-type subunit (NapB)
620	 49.50	+1	764293..765189	-	298	157960450	-	Spea_0621	-	quinol dehydrogenase membrane component
621	 48.84	+1	765186..765920	-	244	157960451	-	Spea_0622	-	quinol dehydrogenase periplasmic component
622	 48.49	+1	765981..768461	-	826	157960452	-	Spea_0623	-	nitrate reductase
623	 43.12	0	768451..768726	-	91	157960453	-	Spea_0624	-	NapD family protein
624	 49.50	+1	769086..770192	-	368	157960454	-	Spea_0625	-	hypothetical protein
625	 50.67	+1	770189..772726	-	845	157960455	-	Spea_0626	-	hypothetical protein
626	 49.03	+1	772719..773387	-	222	157960456	-	Spea_0627	-	ABC transporter related
627	 48.79	+1	773739..779036	+	1765	157960457	-	Spea_0628	-	multi-sensor hybrid histidine kinase
628	 48.92	+1	779176..780195	+	339	157960458	-	Spea_0629	-	response regulator receiver modulated metal dependent phosphohydrolase
629	 47.94	0	780304..781275	-	323	157960459	-	Spea_0630	-	glycine cleavage T protein (aminomethyl transferase)
630	 49.02	+1	781736..782965	-	409	157960460	-	Spea_0631	-	D-3-phosphoglycerate dehydrogenase
631	 46.83	0	783222..783836	+	204	157960461	-	Spea_0632	-	hypothetical protein
632	 43.56	0	784084..784758	+	224	157960462	-	Spea_0633	-	LuxR family transcriptional regulator
633	 47.84	0	785435..786661	+	408	157960463	-	Spea_0634	-	Na+ dependent nucleoside transporter
634	 47.12	0	786755..787465	+	236	157960464	-	Spea_0635	-	purine nucleoside phosphorylase
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.