IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
528	 46.12	0	653848..655044	-	398	157960358	-	Spea_0529	-	putative plasmid transfer protein
529	 44.34	0	655536..656162	+	208	157960359	-	Spea_0530	-	hypothetical protein
530	 42.66	0	656197..656550	-	117	157960360	-	Spea_0531	-	hypothetical protein
531	 50.38	+1	656680..657342	-	220	157960361	-	Spea_0532	-	short-chain dehydrogenase/reductase SDR
532	 49.23	+1	657397..657849	-	150	157960362	-	Spea_0533	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
533	 48.99	+1	657864..658310	-	148	157960363	-	Spea_0534	-	3-dehydroquinate dehydratase, type II
534	 48.94	+1	658483..658905	-	140	157960364	-	Spea_0535	-	hypothetical protein
535	 49.73	+1	659098..659469	+	123	157960365	-	Spea_0536	-	hypothetical protein
536	 46.33	0	659541..659717	+	58	157960366	-	Spea_0537	-	hypothetical protein
537	 47.26	0	659872..660309	+	145	157960367	-	Spea_0538	-	hypothetical protein
538	 49.52	+1	660602..661948	+	448	157960368	-	Spea_0539	-	outer membrane efflux family protein