IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
503	 45.75	0	618715..619173	+	152	157960333	-	Spea_0504	-	rhodanese domain-containing protein
504	 44.66	0	619233..620018	+	261	157960334	-	Spea_0505	-	peptidylprolyl isomerase FKBP-type
505	 41.04	-1	620104..620817	+	237	157960335	-	Spea_0506	-	TPR repeat-containing protein
506	 46.13	0	620880..621590	+	236	157960336	-	Spea_0507	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
507	 44.62	0	621593..622540	+	315	157960337	-	Spea_0508	-	polysulphide reductase NrfD
508	 49.28	+1	622713..623201	+	162	157960338	-	Spea_0509	-	NosL family protein
509	 46.59	0	623257..624576	+	439	157960339	-	Spea_0510	-	periplasmic copper-binding
510	 47.63	0	624672..625580	+	302	157960340	-	Spea_0511	-	ABC transporter related
511	 42.30	0	625582..626406	+	274	157960341	-	Spea_0512	-	ABC-2 type transporter
512	 43.15	0	626672..627955	+	427	157960342	-	Spea_0513	-	transcriptional regulator, CadC
513	 48.57	+1	628444..628863	+	139	157960343	-	Spea_0514	-	D-ribose pyra