IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
416	 43.58	0	509947..510795	+	282	157960246	-	Spea_0417	-	regulatory protein AmpE
417	 45.68	0	511158..511910	+	250	157960247	-	Spea_0418	-	transcriptional regulator PdhR
418	 44.87	0	512019..514679	+	886	157960248	-	Spea_0419	-	pyruvate dehydrogenase subunit E1
419	 46.65	0	514693..516555	+	620	157960249	-	Spea_0420	-	dihydrolipoamide acetyltransferase
420	 45.31	0	516799..518226	+	475	157960250	-	Spea_0421	-	dihydrolipoamide dehydrogenase
421	 44.45	0	518372..522850	+	1492	157960251	-	Spea_0422	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
422	 45.69	0	522943..525159	+	738	157960252	-	Spea_0423	-	patatin
423	 43.50	0	525248..525916	-	222	157960253	-	Spea_0424	-	2-deoxyglucose-6-phosphatase
424	 47.38	0	526341..528938	+	865	157960254	-	Spea_0425	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
425	 42.74	0	529135..529602	-	155	157960255	-	Spea_0426	-	anti-RNA polymerase sigma 70 factor
426	 45.54	0	530134..531198	+	354	1579602