IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
370	 45.64	0	450125..451318	-	397	157960200	-	Spea_0371	-	protein of unknown function DUF513 hemX
371	 46.58	0	451380..452111	-	243	157960201	-	Spea_0372	-	uroporphyrinogen III synthase HEM4
372	 48.34	0	452118..453050	-	310	157960202	-	Spea_0373	-	porphobilinogen deaminase
373	 46.66	0	453249..455672	+	807	157960203	-	Spea_0374	-	adenylate cyclase
374	 39.09	-1	455758..456087	-	109	157960204	-	Spea_0375	-	frataxin family protein
375	 45.27	0	456462..456662	+	66	157960205	-	Spea_0376	-	hypothetical protein
376	 49.64	+1	456668..457912	+	414	157960206	-	Spea_0377	-	diaminopimelate decarboxylase
377	 49.82	+1	457970..458806	+	278	157960207	-	Spea_0378	-	diaminopimelate epimerase
378	 46.29	0	458803..459435	+	210	157960208	-	Spea_0379	-	hypothetical protein
379	 48.09	0	459448..460362	+	304	157960209	-	Spea_0380	-	tyrosine recombinase XerC
380	 45.33	0	460359..461075	+	238	157960210	-	Spea_0381	-	HAD family hydrolase
381	 41.08	-1	461183..461647	+	154