IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4119	 51.24	+1	5029194..5029394	-	66	157963949	-	Spea_4138	-	formate dehydrogenase region TAT target
4120	 46.52	0	5029569..5030243	-	224	157963950	-	Spea_4139	-	cytoplasmic chaperone TorD family protein
4121	 46.90	0	5030254..5031933	-	559	157963951	-	Spea_4140	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4122	 44.85	0	5032081..5032731	-	216	157963952	-	Spea_4141	-	hypothetical protein
4123	 46.79	0	5032728..5033195	-	155	157963953	-	Spea_4142	-	hypothetical protein
4124	 44.48	0	5033480..5034322	+	280	157963954	-	Spea_4143	-	formate dehydrogenase subunit FdhD
4125	 50.33	+1	5034370..5035275	+	301	157963955	-	Spea_4144	-	DNA binding domain-containing protein
4126	 46.24	0	5035287..5035658	-	123	157963956	-	Spea_4145	-	hypothetical protein
4127	 47.42	0	5035780..5036922	-	380	157963957	-	Spea_4146	-	putative SAM-dependent methyltransferase
4128	 40.30	-1	5036980..5037381	-	133	157963958	-	Spea_4147	-	flagellar basal body-associated protein FliL-like protein
4129	 47.31	0	5037533..5038090	+	185