IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4105	 44.51	0	5007771..5009228	-	485	157963935	-	Spea_4124	-	diguanylate cyclase
4106	 50.53	+1	5009988..5010830	-	280	157963936	-	Spea_4125	-	ribokinase-like domain-containing protein
4107	 45.00	0	5011375..5012703	-	442	157963937	-	Spea_4126	-	coproporphyrinogen III oxidase
4108	 44.82	0	5012969..5013952	-	327	157963938	-	Spea_4127	-	formate dehydrogenase, gamma subunit
4109	 48.77	+1	5014033..5014602	-	189	157963939	-	Spea_4128	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4110	 48.02	0	5014632..5017505	-	957	157963940	-	Spea_4129	-	molybdopterin oxidoreductase
4111	 44.95	0	5017524..5017721	-	65	157963941	-	Spea_4130	-	formate dehydrogenase region TAT target
4112	 46.48	0	5019053..5020033	-	326	157963942	-	Spea_4131	-	formate dehydrogenase, gamma subunit
4113	 47.02	0	5020109..5020678	-	189	157963943	-	Spea_4132	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4114	 48.81	+1	5020708..5023563	-	951	157963944	-	Spea_4133	-	molybdopterin oxidoreductase
4115	 45.45	0	5023582..5023779	-	65