version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3951 39.31 -1 4823602..4824555 - 317 157963781 - Spea_3970 - LysR family transcriptional regulator 3952 49.25 +1 4824773..4826500 + 575 157963782 - Spea_3971 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 3953 48.85 +1 4826500..4827285 + 261 157963783 - Spea_3972 - alpha/beta hydrolase fold 3954 48.88 +1 4827341..4828414 + 357 157963784 - Spea_3973 - O-succinylbenzoate synthase 3955 51.20 +1 4828495..4829949 + 484 157963785 - Spea_3974 - O-succinylbenzoate-CoA ligase 3956 41.84 -1 4830318..4830599 - 93 157963786 - Spea_3975 - hypothetical protein 3957 42.08 0 4831284..4832300 + 338 157963787 - Spea_3976 - transposase IS116/IS110/IS902 family protein 3958 44.99 0 4832882..4833739 - 285 157963788 - Spea_3977 - RNA polymerase factor sigma-32 3959 48.14 0 4833973..4834938 - 321 157963789 - Spea_3978 - hypothetical protein 3960 47.76 0 4834948..4835640 - 230 157963790 - Spea_3979 - cell division ATP-binding protein FtsE 3961 49.48 +1 4835734..4837665 - 643 157963791 - Spea_3980 - signal recognition particle-docking protein FtsY 3962 47.46 0 4837891..4838520 + 209 157963792 - Spea_3981 - putative methyltransferase 3963 39.01 -1 4838521..4838802 + 93 157963793 - Spea_3982 - hypothetical protein 3964 43.26 0 4839432..4839995 - 187 157963794 - Spea_3983 - NapC/NirT cytochrome c domain-containing protein 3965 44.76 0 4840385..4840813 + 142 157963795 - Spea_3984 - hypothetical protein 3966 41.90 0 4841018..4841437 + 139 157963796 - Spea_3985 - hypothetical protein 3967 45.56 0 4841556..4841972 + 138 157963797 - Spea_3986 - hypothetical protein 3968 45.04 0 4842116..4842730 + 204 157963798 - Spea_3987 - hypothetical protein 3969 50.65 +1 4842755..4844677 + 640 157963799 - Spea_3988 - RND family efflux transporter MFP subunit 3970 50.83 +1 4844691..4847828 + 1045 157963800 - Spea_3989 - CzcA family heavy metal efflux protein 3971 50.83 +1 4848365..4849147 - 260 157963801 - Spea_3990 - glyoxalase/bleomycin resistance protein/dioxygenase 3972 44.08 0 4849339..4850529 + 396 157963802 - Spea_3991 - diguanylate cyclase 3973 48.86 +1 4850613..4851836 - 407 157963803 - Spea_3992 - secretion protein HlyD family protein 3974 50.29 +1 4851829..4852176 - 115 157963804 - Spea_3993 - major facilitator superfamily permease 3975 45.97 0 4852314..4853342 + 342 157963805 - Spea_3994 - AraC family transcriptional regulator 3976 47.73 0 4853380..4854636 - 418 157963806 - Spea_3995 - aromatic amino acid transporter 3977 46.78 0 4854636..4857059 - 807 157963807 - Spea_3996 - glycerol-3-phosphate acyltransferase 3978 45.89 0 4857468..4858088 + 206 157963808 - Spea_3997 - LexA repressor 3979 46.99 0 4858085..4858633 + 182 157963809 - Spea_3998 - hypothetical protein 3980 47.94 0 4859111..4860685 + 524 157963810 - Spea_3999 - cytochrome c oxidase subunit II 3981 48.97 +1 4860695..4862299 + 534 157963811 - Spea_4000 - cytochrome c oxidase subunit I type 3982 44.79 0 4862302..4862877 + 191 157963812 - Spea_4001 - cytochrome C oxidase assembly protein 3983 46.03 0 4862874..4863755 + 293 157963813 - Spea_4002 - cytochrome c oxidase subunit III 3984 44.44 0 4863801..4864727 + 308 157963814 - Spea_4003 - hypothetical protein 3985 45.12 0 4864923..4865465 + 180 157963815 - Spea_4004 - hypothetical protein 3986 48.27 0 4865611..4866594 + 327 157963816 - Spea_4005 - cytochrome oxidase assembly 3987 48.12 0 4866661..4867566 + 301 157963817 - Spea_4006 - protoheme IX farnesyltransferase 3988 48.41 0 4867601..4868230 + 209 157963818 - Spea_4007 - electron transport protein SCO1/SenC 3989 47.85 0 4868294..4869340 - 348 157963819 - Spea_4008 - polysaccharide deacetylase 3990 47.45 0 4869359..4870690 + 443 157963820 - Spea_4009 - MATE efflux family protein 3991 43.87 0 4870783..4871361 - 192 157963821 - Spea_4010 - putative DNA uptake protein 3992 48.96 +1 4871560..4874112 + 850 157963822 - Spea_4011 - peptidase M14 carboxypeptidase A 3993 50.53 +1 4874147..4874896 - 249 157963823 - Spea_4012 - competence protein ComF 3994 52.34 +2 4874918..4875685 + 255 157963824 - Spea_4013 - bioH protein 3995 50.00 +1 4875808..4876305 + 165 157963825 - Spea_4014 - hypothetical protein 3996 48.51 +1 4876362..4878773 - 803 157963826 - Spea_4015 - RNA-binding S1 domain-containing protein 3997 45.62 0 4878864..4879343 - 159 157963827 - Spea_4016 - transcription elongation factor GreB 3998 50.28 +1 4879682..4880407 + 241 157963828 - Spea_4017 - osmolarity response regulator 3999 48.53 +1 4880530..4881852 + 440 157963829 - Spea_4018 - osmolarity sensor protein 4000 46.37 0 4881979..4883919 + 646 157963830 - Spea_4019 - methyl-accepting chemotaxis sensory transducer 4001 43.79 0 4884012..4884986 - 324 157963831 - Spea_4020 - LysR family transcriptional regulator 4002 43.74 0 4885169..4885927 - 252 157963832 - Spea_4021 - hypothetical protein 4003 43.89 0 4885978..4887768 - 596 157963833 - Spea_4022 - arylsulfotransferase 4004 43.46 0 4888490..4889101 + 203 157963834 - Spea_4023 - DSBA oxidoreductase 4005 48.58 +1 4889111..4889746 + 211 157963835 - Spea_4024 - disulphide bond formation protein DsbB 4006 37.54 -2 4889945..4890610 - 221 157963836 - Spea_4025 - TetR family transcriptional regulator 4007 36.95 -2 4890775..4891521 + 248 157963837 - Spea_4026 - hypothetical protein 4008 43.44 0 4891536..4893296 + 586 157963838 - Spea_4027 - arylsulfotransferase 4009 42.65 0 4893365..4893976 + 203 157963839 - Spea_4028 - DSBA oxidoreductase 4010 47.60 0 4893986..4894609 + 207 157963840 - Spea_4029 - disulphide bond formation protein DsbB 4011 46.35 0 4894801..4895691 - 296 157963841 - Spea_4030 - LysR family transcriptional regulator 4012 47.82 0 4895880..4896818 - 312 157963842 - Spea_4031 - alpha/beta hydrolase domain-containing protein 4013 49.48 +1 4896994..4897662 - 222 157963843 - Spea_4032 - carnitine operon protein CaiE 4014 48.94 +1 4897742..4898593 - 283 157963844 - Spea_4033 - 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase 4015 49.87 +1 4898687..4899472 - 261 157963845 - Spea_4034 - carnitinyl-CoA dehydratase 4016 41.38 -1 4899535..4901088 - 517 157963846 - Spea_4035 - putative crotonobetaine/carnitine-CoA ligase 4017 45.53 0 4901099..4902361 - 420 157963847 - Spea_4036 - crotonobetainyl-CoA:carnitine CoA-transferase 4018 48.11 0 4902556..4903692 - 378 157963848 - Spea_4037 - crotonobetainyl-CoA dehydrogenase 4019 44.74 0 4903734..4905293 - 519 157963849 - Spea_4038 - L-carnitine/gamma-butyrobetaine antiporter 4020 44.83 0 4906269..4907042 + 257 157963850 - Spea_4039 - putative electron transfer flavoprotein FixA 4021 46.71 0 4907056..4907997 + 313 157963851 - Spea_4040 - electron transfer flavoprotein alpha subunit 4022 43.41 0 4908089..4909378 + 429 157963852 - Spea_4041 - FAD dependent oxidoreductase 4023 40.28 -1 4909375..4909662 + 95 157963853 - Spea_4042 - putative ferredoxin 4024 43.56 0 4909938..4911296 + 452 157963854 - Spea_4043 - general substrate transporter 4025 42.02 0 4911516..4912655 + 379 157963855 - Spea_4044 - hypothetical protein 4026 50.04 +1 4913065..4914483 + 472 157963856 - Spea_4045 - magnesium transporter 4027 40.87 -1 4914603..4915862 - 419 157963857 - Spea_4046 - hypothetical protein 4028 49.61 +1 4916115..4916876 - 253 157963858 - Spea_4047 - hypothetical protein 4029 47.06 0 4917157..4919451 + 764 157963859 - Spea_4048 - hypothetical protein 4030 45.81 0 4919772..4921013 + 413 157963860 - Spea_4049 - transcriptional regulator, CadC 4031 47.09 0 4921070..4921912 + 280 157963861 - Spea_4050 - hypothetical protein 4032 45.42 0 4922094..4922333 - 79 157963862 - Spea_4051 - hypothetical protein 4033 47.78 0 4922889..4923767 - 292 157963863 - Spea_4052 - LysR family transcriptional regulator 4034 45.99 0 4924017..4925414 + 465 157963864 - Spea_4053 - multidrug efflux pump VmrA 4035 50.94 +1 4925574..4926317 - 247 157963865 - Spea_4054 - lytic transglycosylase catalytic 4036 42.13 0 4926314..4927336 - 340 157963866 - Spea_4055 - hypothetical protein 4037 46.67 0 4927424..4927993 - 189 157963867 - Spea_4056 - LemA family protein 4038 48.89 +1 4929085..4930704 + 539 157963868 - Spea_4057 - AbgT putative transporter 4039 47.53 0 4931239..4932858 + 539 157963869 - Spea_4058 - AbgT putative transporter 4040 48.75 +1 4933159..4933716 + 185 157963870 - Spea_4059 - phosphodiesterase 4041 47.39 0 4934084..4937242 - 1052 157963871 - Spea_4060 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 4042 45.83 0 4937252..4938403 - 383 157963872 - Spea_4061 - RND family efflux transporter MFP subunit 4043 47.39 0 4938769..4939458 - 229 157963873 - Spea_4062 - 3-methyladenine DNA glycosylase 4044 45.73 0 4939601..4940302 + 233 157963874 - Spea_4063 - glutathione S-transferase domain-containing protein 4045 43.63 0 4940533..4941105 - 190 157963875 - Spea_4064 - hypothetical protein 4046 50.34 +1 4941228..4943267 - 679 157963876 - Spea_4065 - oligopeptidase A 4047 45.09 0 4943450..4944325 + 291 157963877 - Spea_4066 - hypothetical protein 4048 52.38 +2 4944484..4944966 + 160 157963878 - Spea_4067 - hypothetical protein 4049 50.29 +1 4945269..4946624 + 451 157963879 - Spea_4068 - glutathione reductase 4050 41.41 -1 4946724..4947107 + 127 157963880 - Spea_4069 - transposase 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0