IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3918	 43.21	0	4785588..4786832	-	414	157963748	-	Spea_3937	-	hypothetical protein
3919	 41.81	-1	4787112..4787465	-	117	157963749	-	Spea_3938	-	tetraheme cytochrome c
3920	 47.73	0	4787494..4789014	-	506	157963750	-	Spea_3939	-	flavocytochrome c
3921	 48.34	0	4789486..4790418	+	310	157963751	-	Spea_3940	-	LysR family transcriptional regulator
3922	 51.78	+2	4790736..4791716	-	326	157963752	-	Spea_3941	-	quinone oxidoreductase putative YhdH/YhfP
3923	 50.82	+1	4791974..4793494	+	506	157963753	-	Spea_3942	-	aldehyde dehydrogenase
3924	 48.13	0	4793708..4795261	+	517	157963754	-	Spea_3943	-	hypothetical protein
3925	 48.35	0	4795292..4796170	+	292	157963755	-	Spea_3944	-	radical SAM domain-containing protein
3926	 49.47	+1	4798113..4799060	-	315	157963756	-	Spea_3945	-	LysR family transcriptional regulator
3927	 48.05	0	4799324..4799785	+	153	157963757	-	Spea_3946	-	RNA methyltransferase
3928	 49.24	+1	4799885..4801330	-	481	157963758	-	Spea_3947	-	pe