IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3911	 52.27	+2	4778165..4779574	+	469	157963741	-	Spea_3930	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
3912	 49.66	+1	4779643..4780512	-	289	157963742	-	Spea_3931	-	cation diffusion facilitator family transporter
3913	 44.72	0	4780672..4781154	-	160	157963743	-	Spea_3932	-	protein of unknown function Spy-related
3914	 48.39	0	4781386..4782069	+	227	157963744	-	Spea_3933	-	two component transcriptional regulator
3915	 48.58	+1	4782070..4783446	+	458	157963745	-	Spea_3934	-	histidine kinase
3916	 52.78	+2	4783462..4784109	-	215	157963746	-	Spea_3935	-	regulatory protein TetR
3917	 47.30	0	4784231..4785118	+	295	157963747	-	Spea_3936	-	LysR family transcriptional regulator
3918	 43.21	0	4785588..4786832	-	414	157963748	-	Spea_3937	-	hypothetical protein
3919	 41.81	-1	4787112..4787465	-	117	157963749	-	Spea_3938	-	tetraheme cytochrome c
3920	 47.73	0	4787494..4789014	-	506	157963750	-	Spea_3939	-	flavocytochrome c
3921	 48.34	0	4789486..4790418	+	310