IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3816	 36.78	-2	4663527..4663700	-	57	157963646	-	Spea_3835	-	50S ribosomal protein L33
3817	 43.88	0	4663707..4663943	-	78	157963647	-	Spea_3836	-	ribosomal protein L28
3818	 42.04	0	4664069..4664746	-	225	157963648	-	Spea_3837	-	DNA repair protein RadC
3819	 51.59	+1	4664896..4666089	+	397	157963649	-	Spea_3838	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
3820	 48.37	0	4666089..4666547	+	152	157963650	-	Spea_3839	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
3821	 46.80	0	4666647..4667240	+	197	157963651	-	Spea_3840	-	nucleoid occlusion protein
3822	 44.38	0	4667377..4669341	+	654	157963652	-	Spea_3841	-	peptidase S9 prolyl oligopeptidase
3823	 48.64	+1	4669611..4670270	+	219	157963653	-	Spea_3842	-	GTP cyclohydrolase I
3824	 47.51	0	4670794..4671435	-	213	157963654	-	Spea_3843	-	orotate phosphoribosyltransferase
3825	 48.04	0	4671555..4672268	-	237	157963655	-	Spea_3844	-	ribonuclease PH
3826	 48.96	+1	4672541..4673404	+	287