IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3809	 47.96	0	4653521..4655092	-	523	157963639	-	Spea_3828	-	2-isopropylmalate synthase
3810	 43.33	0	4655617..4657407	+	596	157963640	-	Spea_3829	-	response regulator receiver protein
3811	 49.62	+1	4657473..4659296	-	607	157963641	-	Spea_3830	-	ATP-dependent DNA helicase RecQ
3812	 47.31	0	4659468..4659932	+	154	157963642	-	Spea_3831	-	hypothetical protein
3813	 46.17	0	4660109..4660996	+	295	157963643	-	Spea_3832	-	transporter DMT superfamily protein
3814	 43.86	0	4661049..4661561	-	170	157963644	-	Spea_3833	-	hypothetical protein
3815	 47.54	0	4661631..4662953	-	440	157963645	-	Spea_3834	-	N-acetylglutamate synthase
3816	 36.78	-2	4663527..4663700	-	57	157963646	-	Spea_3835	-	50S ribosomal protein L33
3817	 43.88	0	4663707..4663943	-	78	157963647	-	Spea_3836	-	ribosomal protein L28
3818	 42.04	0	4664069..4664746	-	225	157963648	-	Spea_3837	-	DNA repair protein RadC
3819	 51.59	+1	4664896..4666089	+	397	157963649	-	Spea_3838	-	phosphopantothenoy