IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3805	 45.53	0	4648523..4649809	-	428	157963635	-	Spea_3824	-	membrane protein involved in aromatic hydrocarbon degradation
3806	 44.55	0	4650323..4650928	-	201	157963636	-	Spea_3825	-	isopropylmalate isomerase small subunit
3807	 50.61	+1	4650938..4652338	-	466	157963637	-	Spea_3826	-	isopropylmalate isomerase large subunit
3808	 49.13	+1	4652341..4653435	-	364	157963638	-	Spea_3827	-	3-isopropylmalate dehydrogenase
3809	 47.96	0	4653521..4655092	-	523	157963639	-	Spea_3828	-	2-isopropylmalate synthase
3810	 43.33	0	4655617..4657407	+	596	157963640	-	Spea_3829	-	response regulator receiver protein
3811	 49.62	+1	4657473..4659296	-	607	157963641	-	Spea_3830	-	ATP-dependent DNA helicase RecQ
3812	 47.31	0	4659468..4659932	+	154	157963642	-	Spea_3831	-	hypothetical protein
3813	 46.17	0	4660109..4660996	+	295	157963643	-	Spea_3832	-	transporter DMT superfamily protein
3814	 43.86	0	4661049..4661561	-	170	157963644	-	Spea_3833	-	hypothetical protein
3815	 47.54	0	4661631..4662953	-	440