IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
333	 45.27	0	376866..378122	-	418	157960163	-	Spea_0334	-	histidine kinase
334	 48.88	+1	378094..378762	-	222	157960164	-	Spea_0335	-	two component transcriptional regulator
335	 44.53	0	378856..380070	+	404	157960165	-	Spea_0336	-	hypothetical protein
336	 46.72	0	380368..381921	+	517	157960166	-	Spea_0337	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
337	 46.22	0	382112..383764	-	550	157960167	-	Spea_0338	-	phenylalanine/histidine ammonia-lyase
338	 46.72	0	383792..384142	-	116	157960168	-	Spea_0339	-	cytochrome c
339	 47.77	0	384142..385644	-	500	157960169	-	Spea_0340	-	flavocytochrome c
340	 38.16	-2	385905..386753	+	282	157960170	-	Spea_0341	-	LysR family transcriptional regulator
341	 47.02	0	387020..388027	+	335	157960171	-	Spea_0342	-	LysR family transcriptional regulator
342	 51.20	+1	388225..389097	-	290	157960172	-	Spea_0343	-	DNA-binding transcriptional regulator IlvY
343	 48.72	+1	389278..390759	+	493	157960173	-	Spea_0344