IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3746	 47.58	0	4576785..4578005	-	406	157963576	-	Spea_3764	-	type II secretion system protein
3747	 48.56	+1	4578008..4579741	-	577	157963577	-	Spea_3765	-	type II secretion system protein E
3748	 47.16	0	4579741..4581027	-	428	157963578	-	Spea_3766	-	TPR repeat-containing protein
3749	 47.85	0	4581024..4581932	-	302	157963579	-	Spea_3767	-	MSHA biogenesis protein MshM
3750	 47.46	0	4581935..4583605	-	556	157963580	-	Spea_3768	-	pilus (MSHA type) biogenesis protein MshL
3751	 40.71	-1	4583607..4583945	-	112	157963581	-	Spea_3769	-	hypothetical protein
3752	 41.86	-1	4583926..4584582	-	218	157963582	-	Spea_3770	-	MSHA biogenesis protein MshJ
3753	 44.66	0	4584579..4585187	-	202	157963583	-	Spea_3771	-	fimbrial assembly family protein
3754	 43.54	0	4585184..4586065	-	293	157963584	-	Spea_3772	-	biogenesis protein MshI
3755	 45.34	0	4586457..4588364	-	635	157963585	-	Spea_3773	-	regulatory protein CsrD
3756	 45.96	0	4588590..4589840	-	416	157963586	-